Hb_001216_060

Information

Type -
Description -
Location Contig1216: 92641-93087
Sequence    

Annotation

kegg
ID rcu:RCOM_0879920
description hypothetical protein
nr
ID XP_002525015.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG96
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0879920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06585: 92638-93172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001216_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000011_250 0.102944787 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
3 Hb_013399_060 0.1184524128 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
4 Hb_003598_050 0.1211047916 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_000645_080 0.1235933919 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_009421_060 0.1242568613 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
7 Hb_012395_250 0.1252360342 - - hypothetical protein RCOM_1217340 [Ricinus communis]
8 Hb_021596_050 0.1259864575 - - conserved hypothetical protein [Ricinus communis]
9 Hb_180088_010 0.1269554344 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000497_080 0.1269749703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000115_200 0.127620318 - - PREDICTED: endonuclease 2 [Jatropha curcas]
12 Hb_001500_020 0.1318981501 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_006351_050 0.1319062548 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
14 Hb_112950_010 0.1328541681 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
15 Hb_001579_160 0.1335675418 - - PREDICTED: kininogen-1-like [Jatropha curcas]
16 Hb_000521_060 0.1357356774 - - PREDICTED: protein YLS3-like [Jatropha curcas]
17 Hb_002686_220 0.1390974797 - - PREDICTED: expansin-A15-like [Jatropha curcas]
18 Hb_003858_070 0.1404339627 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
19 Hb_027411_030 0.1423397507 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_000093_010 0.1425020672 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]

Gene co-expression network

sample Hb_001216_060 Hb_001216_060 Hb_000011_250 Hb_000011_250 Hb_001216_060--Hb_000011_250 Hb_013399_060 Hb_013399_060 Hb_001216_060--Hb_013399_060 Hb_003598_050 Hb_003598_050 Hb_001216_060--Hb_003598_050 Hb_000645_080 Hb_000645_080 Hb_001216_060--Hb_000645_080 Hb_009421_060 Hb_009421_060 Hb_001216_060--Hb_009421_060 Hb_012395_250 Hb_012395_250 Hb_001216_060--Hb_012395_250 Hb_025194_070 Hb_025194_070 Hb_000011_250--Hb_025194_070 Hb_003893_180 Hb_003893_180 Hb_000011_250--Hb_003893_180 Hb_003125_110 Hb_003125_110 Hb_000011_250--Hb_003125_110 Hb_000497_080 Hb_000497_080 Hb_000011_250--Hb_000497_080 Hb_005784_050 Hb_005784_050 Hb_000011_250--Hb_005784_050 Hb_010863_020 Hb_010863_020 Hb_013399_060--Hb_010863_020 Hb_003858_070 Hb_003858_070 Hb_013399_060--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_013399_060--Hb_001006_300 Hb_013399_060--Hb_003598_050 Hb_180088_010 Hb_180088_010 Hb_013399_060--Hb_180088_010 Hb_001296_010 Hb_001296_010 Hb_013399_060--Hb_001296_010 Hb_112950_010 Hb_112950_010 Hb_003598_050--Hb_112950_010 Hb_001500_020 Hb_001500_020 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_003598_050--Hb_180088_010 Hb_012787_020 Hb_012787_020 Hb_000645_080--Hb_012787_020 Hb_000362_030 Hb_000362_030 Hb_000645_080--Hb_000362_030 Hb_000521_060 Hb_000521_060 Hb_000645_080--Hb_000521_060 Hb_028514_010 Hb_028514_010 Hb_000645_080--Hb_028514_010 Hb_017914_020 Hb_017914_020 Hb_000645_080--Hb_017914_020 Hb_000991_060 Hb_000991_060 Hb_000645_080--Hb_000991_060 Hb_001579_160 Hb_001579_160 Hb_009421_060--Hb_001579_160 Hb_000083_200 Hb_000083_200 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_009421_060--Hb_180088_010 Hb_009421_060--Hb_001500_020 Hb_001541_170 Hb_001541_170 Hb_009421_060--Hb_001541_170 Hb_000093_010 Hb_000093_010 Hb_012395_250--Hb_000093_010 Hb_012395_250--Hb_028514_010 Hb_000327_320 Hb_000327_320 Hb_012395_250--Hb_000327_320 Hb_012395_250--Hb_000645_080 Hb_003607_080 Hb_003607_080 Hb_012395_250--Hb_003607_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.251 2.00838 17.0815 0 0.186904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.510306 0 0.322194 2.55167

CAGE analysis