Hb_001216_110

Information

Type -
Description -
Location Contig1216: 246994-248313
Sequence    

Annotation

kegg
ID rcu:RCOM_0879910
description lung seven transmembrane receptor, putative
nr
ID XP_012074848.1
description PREDICTED: protein GPR107-like [Jatropha curcas]
swissprot
ID Q8BUV8
description Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2
trembl
ID A0A067KH45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08999 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein gpr107-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001216_110 0.0 - - PREDICTED: protein GPR107-like [Jatropha curcas]
2 Hb_000679_040 0.058185863 - - Cellulose synthase 1 [Theobroma cacao]
3 Hb_028639_030 0.0731933272 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
4 Hb_021576_070 0.079708263 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
5 Hb_001969_140 0.0803954806 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
6 Hb_002129_020 0.0939809714 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
7 Hb_001195_310 0.0960636372 - - ATP binding protein, putative [Ricinus communis]
8 Hb_011310_050 0.102453533 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
9 Hb_009674_010 0.1065136814 - - AAEL007687-PA [Aedes aegypti]
10 Hb_000152_710 0.1075226847 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
11 Hb_000684_310 0.1081057532 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
12 Hb_005348_110 0.1092613342 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_001195_090 0.1111860829 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
14 Hb_000003_310 0.1121153002 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
15 Hb_020586_010 0.1137899535 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
16 Hb_006351_020 0.1141870086 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
17 Hb_009674_050 0.1172581883 - - Endosomal P24A protein precursor, putative [Ricinus communis]
18 Hb_000035_220 0.1190130573 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
19 Hb_003540_080 0.1206945618 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000167_040 0.1214307678 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001216_110 Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001216_110--Hb_000679_040 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_021576_070 Hb_021576_070 Hb_001216_110--Hb_021576_070 Hb_001969_140 Hb_001969_140 Hb_001216_110--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001195_310 Hb_001195_310 Hb_001216_110--Hb_001195_310 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_000679_040--Hb_001195_310 Hb_000679_040--Hb_001969_140 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_000679_040--Hb_021576_070 Hb_000570_020 Hb_000570_020 Hb_028639_030--Hb_000570_020 Hb_028639_030--Hb_021576_070 Hb_011360_110 Hb_011360_110 Hb_028639_030--Hb_011360_110 Hb_028639_030--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_028639_030--Hb_001195_090 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_000701_030 Hb_000701_030 Hb_021576_070--Hb_000701_030 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_001754_020 Hb_001754_020 Hb_021576_070--Hb_001754_020 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_002129_020--Hb_001195_090 Hb_020586_010 Hb_020586_010 Hb_002129_020--Hb_020586_010 Hb_009674_010 Hb_009674_010 Hb_002129_020--Hb_009674_010 Hb_002129_020--Hb_028639_030 Hb_002157_270 Hb_002157_270 Hb_002129_020--Hb_002157_270 Hb_001195_310--Hb_000167_040 Hb_001195_310--Hb_020586_010 Hb_000997_070 Hb_000997_070 Hb_001195_310--Hb_000997_070 Hb_001195_310--Hb_011310_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0047 23.3689 33.193 118.538 18.8209 15.2163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.80508 8.55145 22.9596 34.4615 65.2763

CAGE analysis