Hb_001217_010

Information

Type -
Description -
Location Contig1217: 20798-22973
Sequence    

Annotation

kegg
ID mdm:103410615
description formin-like protein 17
nr
ID KDP38669.1
description hypothetical protein JCGZ_04022 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04022 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06600: 20599-89930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001217_010 0.0 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
2 Hb_122636_010 0.1289466309 - - dienelactone hydrolase family protein [Populus trichocarpa]
3 Hb_100137_010 0.136683792 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
4 Hb_188313_010 0.1420715464 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
5 Hb_002760_050 0.1441420537 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000125_020 0.1481494539 transcription factor TF Family: mTERF -
7 Hb_000291_160 0.1484508649 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
8 Hb_000796_020 0.1496132128 - - ADP-ribosylation factor [Phaseolus vulgaris]
9 Hb_000683_100 0.1579224943 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
10 Hb_000111_030 0.1595798617 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
11 Hb_001969_020 0.1612298914 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
12 Hb_002660_110 0.1659740409 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
13 Hb_182713_020 0.1673165716 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
14 Hb_010577_010 0.1677762861 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
15 Hb_148130_020 0.1698505437 - - -
16 Hb_001747_030 0.1730390305 - - hypothetical protein F383_08210 [Gossypium arboreum]
17 Hb_006634_110 0.1751213715 - - BnaC04g40780D [Brassica napus]
18 Hb_000016_060 0.1788143839 - - mads box protein, putative [Ricinus communis]
19 Hb_030992_010 0.1789904898 - - acetylornithine aminotransferase, putative [Ricinus communis]
20 Hb_001217_040 0.1799267836 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_001217_010 Hb_001217_010 Hb_122636_010 Hb_122636_010 Hb_001217_010--Hb_122636_010 Hb_100137_010 Hb_100137_010 Hb_001217_010--Hb_100137_010 Hb_188313_010 Hb_188313_010 Hb_001217_010--Hb_188313_010 Hb_002760_050 Hb_002760_050 Hb_001217_010--Hb_002760_050 Hb_000125_020 Hb_000125_020 Hb_001217_010--Hb_000125_020 Hb_000291_160 Hb_000291_160 Hb_001217_010--Hb_000291_160 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_122636_010--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_009083_030 Hb_009083_030 Hb_188313_010--Hb_009083_030 Hb_001247_030 Hb_001247_030 Hb_188313_010--Hb_001247_030 Hb_184541_010 Hb_184541_010 Hb_188313_010--Hb_184541_010 Hb_188313_010--Hb_100137_010 Hb_002760_050--Hb_100137_010 Hb_001999_100 Hb_001999_100 Hb_002760_050--Hb_001999_100 Hb_002760_050--Hb_122636_010 Hb_002760_050--Hb_000291_160 Hb_002760_050--Hb_002660_110 Hb_000481_050 Hb_000481_050 Hb_000125_020--Hb_000481_050 Hb_002562_110 Hb_002562_110 Hb_000125_020--Hb_002562_110 Hb_004669_030 Hb_004669_030 Hb_000125_020--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000125_020--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060 Hb_000291_160--Hb_002660_110 Hb_000739_200 Hb_000739_200 Hb_000291_160--Hb_000739_200 Hb_026740_020 Hb_026740_020 Hb_000291_160--Hb_026740_020 Hb_000291_160--Hb_001999_100 Hb_183610_010 Hb_183610_010 Hb_000291_160--Hb_183610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37821 11.9076 4.24932 103.164 8.68639 21.7624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0238 20.223 13.0512 10.5513 13.4628

CAGE analysis