Hb_001217_050

Information

Type -
Description -
Location Contig1217: 89457-94746
Sequence    

Annotation

kegg
ID rcu:RCOM_0639960
description actin binding protein, putative
nr
ID XP_002532961.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID Q9LVN1
description Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=3
trembl
ID B9T3Z2
description Formin-like protein OS=Ricinus communis GN=RCOM_0639960 PE=3 SV=1
Gene Ontology
ID GO:0005515
description formin-like protein 18 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06600: 20599-89930 , PASA_asmbl_06601: 89995-93644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001217_050 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_000107_490 0.0713880927 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
3 Hb_000313_120 0.0735344755 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
4 Hb_010222_070 0.0743532833 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
5 Hb_000245_040 0.0751195458 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
6 Hb_004030_080 0.0796414909 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
7 Hb_000599_190 0.0797106077 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
8 Hb_000258_160 0.0804224276 - - conserved hypothetical protein [Ricinus communis]
9 Hb_066920_030 0.0805914694 - - PREDICTED: adagio protein 1 [Jatropha curcas]
10 Hb_000028_130 0.0814668127 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
11 Hb_000453_250 0.0820797903 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
12 Hb_002818_030 0.0830199648 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
13 Hb_000317_370 0.0830979622 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
14 Hb_013358_010 0.0834063554 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
15 Hb_000174_270 0.0837810321 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
16 Hb_000215_140 0.0843916715 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
17 Hb_003494_020 0.0847639211 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
18 Hb_012490_090 0.085194884 - - PREDICTED: myosin-17 [Jatropha curcas]
19 Hb_062226_070 0.0853192039 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
20 Hb_001628_070 0.0862722054 - - hect ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001217_050 Hb_001217_050 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_010222_070 Hb_010222_070 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_000599_190 Hb_000599_190 Hb_001217_050--Hb_000599_190 Hb_000107_490--Hb_000245_040 Hb_000890_210 Hb_000890_210 Hb_000107_490--Hb_000890_210 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_004724_150 Hb_004724_150 Hb_000107_490--Hb_004724_150 Hb_000789_250 Hb_000789_250 Hb_000313_120--Hb_000789_250 Hb_003058_260 Hb_003058_260 Hb_000313_120--Hb_003058_260 Hb_001628_070 Hb_001628_070 Hb_000313_120--Hb_001628_070 Hb_000215_140 Hb_000215_140 Hb_000313_120--Hb_000215_140 Hb_000317_370 Hb_000317_370 Hb_000313_120--Hb_000317_370 Hb_000412_010 Hb_000412_010 Hb_000313_120--Hb_000412_010 Hb_003768_050 Hb_003768_050 Hb_010222_070--Hb_003768_050 Hb_000024_040 Hb_000024_040 Hb_010222_070--Hb_000024_040 Hb_002007_160 Hb_002007_160 Hb_010222_070--Hb_002007_160 Hb_000347_390 Hb_000347_390 Hb_010222_070--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_010222_070--Hb_002234_090 Hb_000297_010 Hb_000297_010 Hb_000245_040--Hb_000297_010 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000245_040--Hb_000890_210 Hb_002830_010 Hb_002830_010 Hb_004030_080--Hb_002830_010 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_005582_040 Hb_005582_040 Hb_004030_080--Hb_005582_040 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_000599_190--Hb_002007_160 Hb_145022_010 Hb_145022_010 Hb_000599_190--Hb_145022_010 Hb_001104_190 Hb_001104_190 Hb_000599_190--Hb_001104_190 Hb_004705_020 Hb_004705_020 Hb_000599_190--Hb_004705_020 Hb_009767_080 Hb_009767_080 Hb_000599_190--Hb_009767_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51003 11.7194 3.73536 8.11721 6.72673 5.60197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46393 5.82975 9.85302 8.66223 8.1063

CAGE analysis