Hb_001217_060

Information

Type -
Description -
Location Contig1217: 117604-122243
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001217_060 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_012188_010 0.0260909956 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_000071_200 0.1132400443 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
4 Hb_032076_010 0.1233193579 - - -
5 Hb_000579_150 0.2099109171 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
6 Hb_005504_010 0.2519905468 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
7 Hb_005539_300 0.2589767875 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
8 Hb_101040_010 0.2678678032 - - -
9 Hb_001676_030 0.2914664245 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_062585_010 0.2921431198 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
11 Hb_003772_080 0.2984227338 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_011909_090 0.3064328215 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
13 Hb_001673_030 0.3084245555 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
14 Hb_063433_010 0.3199879658 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
15 Hb_001396_170 0.3231564612 - - unnamed protein product [Vitis vinifera]
16 Hb_085922_010 0.3375776498 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_001589_070 0.3384815722 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000317_090 0.3441089536 - - hypothetical protein RCOM_1176360 [Ricinus communis]
19 Hb_000504_250 0.3483558268 - - -
20 Hb_002805_140 0.3484086542 - - hypothetical protein POPTR_0001s28390g [Populus trichocarpa]

Gene co-expression network

sample Hb_001217_060 Hb_001217_060 Hb_012188_010 Hb_012188_010 Hb_001217_060--Hb_012188_010 Hb_000071_200 Hb_000071_200 Hb_001217_060--Hb_000071_200 Hb_032076_010 Hb_032076_010 Hb_001217_060--Hb_032076_010 Hb_000579_150 Hb_000579_150 Hb_001217_060--Hb_000579_150 Hb_005504_010 Hb_005504_010 Hb_001217_060--Hb_005504_010 Hb_005539_300 Hb_005539_300 Hb_001217_060--Hb_005539_300 Hb_012188_010--Hb_032076_010 Hb_012188_010--Hb_000071_200 Hb_012188_010--Hb_000579_150 Hb_012188_010--Hb_005504_010 Hb_101040_010 Hb_101040_010 Hb_012188_010--Hb_101040_010 Hb_000071_200--Hb_032076_010 Hb_000071_200--Hb_101040_010 Hb_001676_030 Hb_001676_030 Hb_000071_200--Hb_001676_030 Hb_000071_200--Hb_005539_300 Hb_032076_010--Hb_000579_150 Hb_032076_010--Hb_005504_010 Hb_032076_010--Hb_101040_010 Hb_054649_020 Hb_054649_020 Hb_000579_150--Hb_054649_020 Hb_000188_030 Hb_000188_030 Hb_000579_150--Hb_000188_030 Hb_001250_120 Hb_001250_120 Hb_000579_150--Hb_001250_120 Hb_005504_010--Hb_101040_010 Hb_005504_010--Hb_000071_200 Hb_005504_010--Hb_001676_030 Hb_063433_010 Hb_063433_010 Hb_005504_010--Hb_063433_010 Hb_005539_300--Hb_001676_030 Hb_142068_020 Hb_142068_020 Hb_005539_300--Hb_142068_020 Hb_000454_020 Hb_000454_020 Hb_005539_300--Hb_000454_020 Hb_000656_130 Hb_000656_130 Hb_005539_300--Hb_000656_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113457 0.0045318 0 0 0 0.0041786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis