Hb_001218_030

Information

Type -
Description -
Location Contig1218: 52026-57641
Sequence    

Annotation

kegg
ID tcc:TCM_034905
description hypothetical protein
nr
ID XP_012067871.1
description PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06606: 53161-53415 , PASA_asmbl_06608: 55689-57424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001218_030 0.0 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
2 Hb_000853_150 0.0543763462 - - Fumarase 1 isoform 2 [Theobroma cacao]
3 Hb_000920_200 0.0580742564 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
4 Hb_001828_150 0.0583230378 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
5 Hb_000200_020 0.0663885996 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
6 Hb_001123_040 0.0699077058 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
7 Hb_000483_260 0.0705588119 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
8 Hb_004157_050 0.0710596498 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
9 Hb_011344_190 0.0725262094 - - PREDICTED: maspardin [Jatropha curcas]
10 Hb_002119_130 0.0725573375 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
11 Hb_000173_410 0.0727094058 - - PREDICTED: BI1-like protein [Jatropha curcas]
12 Hb_006573_190 0.0753190338 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
13 Hb_000665_140 0.0764254549 - - PREDICTED: protein MEMO1 [Jatropha curcas]
14 Hb_000460_030 0.0765497221 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
15 Hb_003058_120 0.0784500966 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
16 Hb_005765_050 0.0786456544 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
17 Hb_008841_020 0.078742999 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
18 Hb_000003_230 0.0797755668 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
19 Hb_002014_020 0.0806136481 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
20 Hb_000665_050 0.0814006765 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001218_030 Hb_001218_030 Hb_000853_150 Hb_000853_150 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001828_150 Hb_001828_150 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_002119_130 Hb_002119_130 Hb_000920_200--Hb_002119_130 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_000920_200--Hb_001828_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_004157_050 Hb_004157_050 Hb_001123_040--Hb_004157_050 Hb_000069_720 Hb_000069_720 Hb_001123_040--Hb_000069_720 Hb_004934_100 Hb_004934_100 Hb_001123_040--Hb_004934_100 Hb_000035_180 Hb_000035_180 Hb_001123_040--Hb_000035_180 Hb_001123_040--Hb_001828_150 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33958 1.56504 2.83484 3.40918 1.56226 1.92704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22457 3.66465 3.61563 3.65712 2.33215

CAGE analysis