Hb_001218_060

Information

Type -
Description -
Location Contig1218: 83373-84187
Sequence    

Annotation

kegg
ID rcu:RCOM_1035140
description hypothetical protein
nr
ID XP_002513915.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJJ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1035140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06612: 83166-84265 , PASA_asmbl_06613: 83218-84251
cDNA
(Sanger)
(ID:Location)		 012_C05.ab1: 83459-84251 , 021_C04.ab1: 83260-84275

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001218_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000282_010 0.0649334414 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001123_340 0.067960011 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
4 Hb_078954_020 0.0731610555 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
5 Hb_005511_080 0.0821992613 - - Protein MLO, putative [Ricinus communis]
6 Hb_012084_010 0.1054921524 - - cold regulated protein [Manihot esculenta]
7 Hb_003077_010 0.1058564991 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001926_010 0.1151405776 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
9 Hb_089736_010 0.1182920451 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
10 Hb_104014_010 0.1190436625 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
11 Hb_000264_160 0.1193621592 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
12 Hb_002918_170 0.1194101643 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
13 Hb_001606_040 0.1226334449 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
14 Hb_063584_010 0.1234615285 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
15 Hb_088118_010 0.1244434181 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_000187_100 0.124751528 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
17 Hb_103709_010 0.1249871024 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_001401_050 0.1266859001 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
19 Hb_004223_120 0.1292520914 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
20 Hb_000431_080 0.1364125359 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]

Gene co-expression network

sample Hb_001218_060 Hb_001218_060 Hb_000282_010 Hb_000282_010 Hb_001218_060--Hb_000282_010 Hb_001123_340 Hb_001123_340 Hb_001218_060--Hb_001123_340 Hb_078954_020 Hb_078954_020 Hb_001218_060--Hb_078954_020 Hb_005511_080 Hb_005511_080 Hb_001218_060--Hb_005511_080 Hb_012084_010 Hb_012084_010 Hb_001218_060--Hb_012084_010 Hb_003077_010 Hb_003077_010 Hb_001218_060--Hb_003077_010 Hb_000282_010--Hb_078954_020 Hb_001926_010 Hb_001926_010 Hb_000282_010--Hb_001926_010 Hb_000282_010--Hb_001123_340 Hb_001921_040 Hb_001921_040 Hb_000282_010--Hb_001921_040 Hb_088118_010 Hb_088118_010 Hb_000282_010--Hb_088118_010 Hb_001123_340--Hb_001926_010 Hb_089736_010 Hb_089736_010 Hb_001123_340--Hb_089736_010 Hb_000187_100 Hb_000187_100 Hb_001123_340--Hb_000187_100 Hb_000264_160 Hb_000264_160 Hb_001123_340--Hb_000264_160 Hb_078954_020--Hb_001123_340 Hb_078954_020--Hb_001926_010 Hb_000152_200 Hb_000152_200 Hb_078954_020--Hb_000152_200 Hb_063584_010 Hb_063584_010 Hb_078954_020--Hb_063584_010 Hb_104014_010 Hb_104014_010 Hb_005511_080--Hb_104014_010 Hb_005511_080--Hb_001123_340 Hb_002561_040 Hb_002561_040 Hb_005511_080--Hb_002561_040 Hb_065256_010 Hb_065256_010 Hb_005511_080--Hb_065256_010 Hb_005888_060 Hb_005888_060 Hb_005511_080--Hb_005888_060 Hb_103709_010 Hb_103709_010 Hb_012084_010--Hb_103709_010 Hb_001606_040 Hb_001606_040 Hb_012084_010--Hb_001606_040 Hb_022406_010 Hb_022406_010 Hb_012084_010--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_012084_010--Hb_003964_050 Hb_005839_080 Hb_005839_080 Hb_012084_010--Hb_005839_080 Hb_003077_010--Hb_001606_040 Hb_003077_010--Hb_001123_340 Hb_003077_010--Hb_104014_010 Hb_003077_010--Hb_089736_010 Hb_002121_030 Hb_002121_030 Hb_003077_010--Hb_002121_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.46306 44.552 2.7286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.234828 7.98264

CAGE analysis