Hb_001220_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig1220: 57003-58720
Sequence    

Annotation

kegg
ID rcu:RCOM_0848300
description hypothetical protein
nr
ID XP_002526680.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0JQF7
description Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1
trembl
ID B9SL11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0848300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06686: 57273-57690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001220_040 0.0 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
2 Hb_006452_060 0.099415408 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_005348_080 0.1202495108 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
4 Hb_180992_010 0.128765846 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
5 Hb_000085_310 0.1375937505 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
6 Hb_000340_430 0.1388435633 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002662_100 0.1411990335 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
8 Hb_004204_190 0.1425165198 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
9 Hb_005333_040 0.1431190361 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
10 Hb_001804_040 0.1436256858 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004650_070 0.1442877231 - - -
12 Hb_000326_010 0.1452594597 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
13 Hb_073973_110 0.1454988695 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
14 Hb_000061_160 0.1463406189 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
15 Hb_000436_050 0.1470937231 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]
16 Hb_052135_030 0.1471949795 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_000866_300 0.1498571779 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
18 Hb_004295_020 0.1499607521 - - thioredoxin II-type 1 [Hevea brasiliensis]
19 Hb_000729_060 0.150873962 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001366_230 0.1520681637 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001220_040 Hb_001220_040 Hb_006452_060 Hb_006452_060 Hb_001220_040--Hb_006452_060 Hb_005348_080 Hb_005348_080 Hb_001220_040--Hb_005348_080 Hb_180992_010 Hb_180992_010 Hb_001220_040--Hb_180992_010 Hb_000085_310 Hb_000085_310 Hb_001220_040--Hb_000085_310 Hb_000340_430 Hb_000340_430 Hb_001220_040--Hb_000340_430 Hb_002662_100 Hb_002662_100 Hb_001220_040--Hb_002662_100 Hb_000291_210 Hb_000291_210 Hb_006452_060--Hb_000291_210 Hb_030620_010 Hb_030620_010 Hb_006452_060--Hb_030620_010 Hb_006452_060--Hb_000085_310 Hb_030982_040 Hb_030982_040 Hb_006452_060--Hb_030982_040 Hb_000436_050 Hb_000436_050 Hb_006452_060--Hb_000436_050 Hb_000831_060 Hb_000831_060 Hb_005348_080--Hb_000831_060 Hb_008016_010 Hb_008016_010 Hb_005348_080--Hb_008016_010 Hb_000291_200 Hb_000291_200 Hb_005348_080--Hb_000291_200 Hb_073973_110 Hb_073973_110 Hb_005348_080--Hb_073973_110 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_098709_010 Hb_098709_010 Hb_005348_080--Hb_098709_010 Hb_000329_610 Hb_000329_610 Hb_180992_010--Hb_000329_610 Hb_000933_140 Hb_000933_140 Hb_180992_010--Hb_000933_140 Hb_180992_010--Hb_005348_080 Hb_004295_020 Hb_004295_020 Hb_180992_010--Hb_004295_020 Hb_000061_160 Hb_000061_160 Hb_180992_010--Hb_000061_160 Hb_001366_220 Hb_001366_220 Hb_000085_310--Hb_001366_220 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000809_040 Hb_000809_040 Hb_000085_310--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000085_310--Hb_001366_230 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_001488_100 Hb_001488_100 Hb_000340_430--Hb_001488_100 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_000313_380 Hb_000313_380 Hb_002662_100--Hb_000313_380 Hb_002662_100--Hb_001366_220 Hb_002662_100--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002662_100--Hb_009026_050 Hb_002662_100--Hb_001366_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.38573 1.29528 1.25962 0.45248 16.7502 8.13043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.86797 15.4382 9.58603 2.07261 0.234147

CAGE analysis