Hb_001220_050

Information

Type -
Description -
Location Contig1220: 59609-75420
Sequence    

Annotation

kegg
ID rcu:RCOM_0848190
description DNA-damage-inducible protein f, putative
nr
ID XP_002526679.1
description DNA-damage-inducible protein f, putative [Ricinus communis]
swissprot
ID Q84K71
description MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1
trembl
ID B9SL10
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0848190 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06687: 59569-69950 , PASA_asmbl_06688: 59569-62773 , PASA_asmbl_06691: 66085-66487 , PASA_asmbl_06692: 72902-75137 , PASA_asmbl_06693: 73465-74550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001220_050 0.0 - - DNA-damage-inducible protein f, putative [Ricinus communis]
2 Hb_000345_370 0.090049017 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
3 Hb_007769_040 0.0918030851 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_009020_040 0.0918410249 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
5 Hb_011861_050 0.0943401524 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
6 Hb_001723_030 0.1016567529 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
7 Hb_006198_130 0.1020385284 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
8 Hb_000309_020 0.1035440659 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
9 Hb_000144_060 0.1049706333 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_025477_050 0.1052711448 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000260_710 0.1082826593 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
12 Hb_000589_110 0.1101620526 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
13 Hb_002053_110 0.110825674 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000480_040 0.1112654236 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
15 Hb_000878_030 0.1134013973 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_001080_070 0.1145473049 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
17 Hb_000363_060 0.115209435 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_016461_030 0.1168898721 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001907_070 0.1177152335 - - 50S ribosomal protein L1p, putative [Ricinus communis]
20 Hb_010344_030 0.1178426092 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001220_050 Hb_001220_050 Hb_000345_370 Hb_000345_370 Hb_001220_050--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_001220_050--Hb_007769_040 Hb_009020_040 Hb_009020_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001723_030 Hb_001723_030 Hb_001220_050--Hb_001723_030 Hb_006198_130 Hb_006198_130 Hb_001220_050--Hb_006198_130 Hb_000144_060 Hb_000144_060 Hb_000345_370--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_002542_160 Hb_002542_160 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_000345_370--Hb_016461_030 Hb_025477_050 Hb_025477_050 Hb_007769_040--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007769_040--Hb_000589_110 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_013405_080 Hb_013405_080 Hb_007769_040--Hb_013405_080 Hb_000200_350 Hb_000200_350 Hb_009020_040--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_009020_040--Hb_000388_150 Hb_005250_010 Hb_005250_010 Hb_009020_040--Hb_005250_010 Hb_002232_390 Hb_002232_390 Hb_009020_040--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_009020_040--Hb_003475_020 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_011861_050--Hb_000144_060 Hb_011861_050--Hb_000345_370 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_001723_030--Hb_000309_020 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_003171_030 Hb_003171_030 Hb_006198_130--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_006198_130--Hb_009687_020 Hb_000059_270 Hb_000059_270 Hb_006198_130--Hb_000059_270 Hb_001269_500 Hb_001269_500 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82731 1.41244 4.18475 3.21581 2.27872 2.38142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28557 1.56114 1.36805 0.964228 9.41997

CAGE analysis