Hb_001221_050

Information

Type -
Description -
Location Contig1221: 22155-25904
Sequence    

Annotation

kegg
ID rcu:RCOM_1506660
description leucine-rich repeat protein, putative (EC:1.3.1.74)
nr
ID XP_012079866.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
swissprot
ID Q8LFN2
description Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1
trembl
ID A0A067K3Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11317 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at3g03770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06700: 21736-22966 , PASA_asmbl_06701: 23163-25942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_050 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
2 Hb_005946_200 0.068685057 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
3 Hb_003427_020 0.0721260208 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
4 Hb_021576_160 0.0747096642 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
5 Hb_006153_020 0.075149347 - - vacuolar invertase [Manihot esculenta]
6 Hb_002804_070 0.0867613677 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
7 Hb_001333_030 0.0974324025 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
8 Hb_001022_070 0.0976164875 - - cell wall invertase [Manihot esculenta]
9 Hb_004374_170 0.1059184731 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
10 Hb_002303_050 0.1071832997 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
11 Hb_001953_010 0.1104349806 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
12 Hb_000000_320 0.1207477562 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
13 Hb_029622_090 0.1211747428 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
14 Hb_004474_070 0.1229984699 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
15 Hb_002186_030 0.1276928632 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
16 Hb_004109_110 0.1286537792 - - dioxygenase family protein [Populus trichocarpa]
17 Hb_000047_010 0.1310628327 - - PREDICTED: expansin-like A1 [Jatropha curcas]
18 Hb_002811_320 0.1325576796 - - cation-transporting atpase plant, putative [Ricinus communis]
19 Hb_011028_040 0.133742813 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_000120_600 0.1341027352 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_050 Hb_001221_050 Hb_005946_200 Hb_005946_200 Hb_001221_050--Hb_005946_200 Hb_003427_020 Hb_003427_020 Hb_001221_050--Hb_003427_020 Hb_021576_160 Hb_021576_160 Hb_001221_050--Hb_021576_160 Hb_006153_020 Hb_006153_020 Hb_001221_050--Hb_006153_020 Hb_002804_070 Hb_002804_070 Hb_001221_050--Hb_002804_070 Hb_001333_030 Hb_001333_030 Hb_001221_050--Hb_001333_030 Hb_002303_050 Hb_002303_050 Hb_005946_200--Hb_002303_050 Hb_005946_200--Hb_002804_070 Hb_005946_200--Hb_006153_020 Hb_001022_070 Hb_001022_070 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320 Hb_003427_020--Hb_021576_160 Hb_003427_020--Hb_001022_070 Hb_003427_020--Hb_002804_070 Hb_000000_320 Hb_000000_320 Hb_003427_020--Hb_000000_320 Hb_003427_020--Hb_005946_200 Hb_021576_160--Hb_006153_020 Hb_021576_160--Hb_001333_030 Hb_021576_160--Hb_005946_200 Hb_029622_090 Hb_029622_090 Hb_021576_160--Hb_029622_090 Hb_004109_110 Hb_004109_110 Hb_006153_020--Hb_004109_110 Hb_006002_020 Hb_006002_020 Hb_006153_020--Hb_006002_020 Hb_006153_020--Hb_001333_030 Hb_001953_010 Hb_001953_010 Hb_002804_070--Hb_001953_010 Hb_004374_170 Hb_004374_170 Hb_002804_070--Hb_004374_170 Hb_000120_600 Hb_000120_600 Hb_002804_070--Hb_000120_600 Hb_002804_070--Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_002804_070--Hb_004474_070 Hb_011028_040 Hb_011028_040 Hb_001333_030--Hb_011028_040 Hb_001333_030--Hb_003427_020 Hb_001333_030--Hb_001022_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0154959 5.47819 4.77516 8.83395 0.0150081 0.0218493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0527532 0 0.0263808 0.115385 1.38251

CAGE analysis