Hb_001221_070

Information

Type -
Description -
Location Contig1221: 33919-34341
Sequence    

Annotation

kegg
ID rcu:RCOM_1506610
description Polcalcin Jun o, putative
nr
ID XP_012079860.1
description PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
swissprot
ID Q9SRE6
description Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1
trembl
ID A0A067KF96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11311 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein cml19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_070 0.0 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
2 Hb_001277_370 0.048670976 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
3 Hb_007632_230 0.0581252275 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
4 Hb_004553_040 0.0683785027 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_007357_010 0.1001472318 - - cytochrome P450, putative [Ricinus communis]
6 Hb_167206_010 0.1005760036 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
7 Hb_000319_010 0.1023113877 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
8 Hb_054926_010 0.1100058227 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_008406_060 0.1118829641 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
10 Hb_018134_010 0.114016403 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
11 Hb_070613_010 0.1192543794 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_008019_010 0.1207680248 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
13 Hb_000926_210 0.1243300772 - - LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
14 Hb_161103_010 0.1264339425 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_004040_010 0.1300140309 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
16 Hb_018563_010 0.136676493 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
17 Hb_186995_010 0.1366820617 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
18 Hb_001477_060 0.1370193893 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
19 Hb_006002_020 0.1422925646 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
20 Hb_002301_340 0.1444774611 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]

Gene co-expression network

sample Hb_001221_070 Hb_001221_070 Hb_001277_370 Hb_001277_370 Hb_001221_070--Hb_001277_370 Hb_007632_230 Hb_007632_230 Hb_001221_070--Hb_007632_230 Hb_004553_040 Hb_004553_040 Hb_001221_070--Hb_004553_040 Hb_007357_010 Hb_007357_010 Hb_001221_070--Hb_007357_010 Hb_167206_010 Hb_167206_010 Hb_001221_070--Hb_167206_010 Hb_000319_010 Hb_000319_010 Hb_001221_070--Hb_000319_010 Hb_001277_370--Hb_007632_230 Hb_001277_370--Hb_004553_040 Hb_001277_370--Hb_167206_010 Hb_001277_370--Hb_007357_010 Hb_001277_370--Hb_000319_010 Hb_007632_230--Hb_004553_040 Hb_007632_230--Hb_000319_010 Hb_054926_010 Hb_054926_010 Hb_007632_230--Hb_054926_010 Hb_007632_230--Hb_007357_010 Hb_004553_040--Hb_167206_010 Hb_004553_040--Hb_000319_010 Hb_018563_010 Hb_018563_010 Hb_004553_040--Hb_018563_010 Hb_001477_060 Hb_001477_060 Hb_007357_010--Hb_001477_060 Hb_124677_090 Hb_124677_090 Hb_007357_010--Hb_124677_090 Hb_001715_060 Hb_001715_060 Hb_007357_010--Hb_001715_060 Hb_186995_010 Hb_186995_010 Hb_167206_010--Hb_186995_010 Hb_167206_010--Hb_018563_010 Hb_012496_020 Hb_012496_020 Hb_167206_010--Hb_012496_020 Hb_167206_010--Hb_000319_010 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.372729 0.423796 0.360443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.252161

CAGE analysis