Hb_001221_080

Information

Type -
Description -
Location Contig1221: 36083-43059
Sequence    

Annotation

kegg
ID rcu:RCOM_1506590
description Conserved oligomeric Golgi complex component, putative
nr
ID XP_012079859.1
description PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9VF78
description Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster GN=ldlCp PE=2 SV=1
trembl
ID A0A067K7C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11309 PE=4 SV=1
Gene Ontology
ID GO:0005773
description conserved oligomeric golgi complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06702: 37007-43030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_080 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
2 Hb_000441_220 0.0592097481 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001408_140 0.0621449298 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
4 Hb_000029_300 0.0648418918 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
5 Hb_002909_140 0.0651423334 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
6 Hb_013399_020 0.0655843914 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
7 Hb_000213_010 0.0675042376 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
8 Hb_020378_030 0.0690348817 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
9 Hb_007416_330 0.0693249712 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
10 Hb_003058_260 0.0701834718 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
11 Hb_000617_180 0.0704846788 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
12 Hb_000522_170 0.070561708 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
13 Hb_001814_030 0.0715899939 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
14 Hb_000975_040 0.07199195 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
15 Hb_000462_060 0.0722582755 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
16 Hb_002205_250 0.0724038917 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
17 Hb_002375_010 0.0724891846 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
18 Hb_002026_150 0.0726414059 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
19 Hb_105105_010 0.0740029294 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
20 Hb_000313_120 0.0751059178 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]

Gene co-expression network

sample Hb_001221_080 Hb_001221_080 Hb_000441_220 Hb_000441_220 Hb_001221_080--Hb_000441_220 Hb_001408_140 Hb_001408_140 Hb_001221_080--Hb_001408_140 Hb_000029_300 Hb_000029_300 Hb_001221_080--Hb_000029_300 Hb_002909_140 Hb_002909_140 Hb_001221_080--Hb_002909_140 Hb_013399_020 Hb_013399_020 Hb_001221_080--Hb_013399_020 Hb_000213_010 Hb_000213_010 Hb_001221_080--Hb_000213_010 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_000060_090 Hb_000060_090 Hb_000029_300--Hb_000060_090 Hb_000923_010 Hb_000923_010 Hb_000029_300--Hb_000923_010 Hb_000029_300--Hb_000213_010 Hb_014361_070 Hb_014361_070 Hb_000029_300--Hb_014361_070 Hb_000029_300--Hb_000340_530 Hb_007576_110 Hb_007576_110 Hb_000029_300--Hb_007576_110 Hb_007803_050 Hb_007803_050 Hb_002909_140--Hb_007803_050 Hb_000212_380 Hb_000212_380 Hb_002909_140--Hb_000212_380 Hb_012498_010 Hb_012498_010 Hb_002909_140--Hb_012498_010 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_002169_050 Hb_002169_050 Hb_002909_140--Hb_002169_050 Hb_000170_090 Hb_000170_090 Hb_013399_020--Hb_000170_090 Hb_013399_020--Hb_000923_010 Hb_105328_020 Hb_105328_020 Hb_013399_020--Hb_105328_020 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_013399_020--Hb_093458_040 Hb_012022_090 Hb_012022_090 Hb_000213_010--Hb_012022_090 Hb_021297_050 Hb_021297_050 Hb_000213_010--Hb_021297_050 Hb_000213_010--Hb_003683_020 Hb_000116_500 Hb_000116_500 Hb_000213_010--Hb_000116_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.23744 10.1409 10.7262 11.6996 13.7101 10.9692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24733 7.61294 13.3242 13.0229 9.90439

CAGE analysis