Hb_001221_100

Information

Type -
Description -
Location Contig1221: 63753-67645
Sequence    

Annotation

kegg
ID cit:102623241
description elongation factor 1-delta 1-like
nr
ID XP_006494744.1
description PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
swissprot
ID P93447
description Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3
trembl
ID V4SQS2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027451mg PE=3 SV=1
Gene Ontology
ID GO:0005853
description elongation factor 1-delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06706: 63755-66847 , PASA_asmbl_06707: 63752-66847
cDNA
(Sanger)
(ID:Location)		 006_L24.ab1: 63750-66041 , 013_K11.ab1: 63752-66109 , 023_A16.ab1: 63755-66020 , 024_P20.ab1: 63752-66023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_100 0.0 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
2 Hb_005291_030 0.0715558941 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_002303_070 0.0723356501 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
4 Hb_005730_120 0.0748640995 - - PREDICTED: protein WHI4 [Jatropha curcas]
5 Hb_010417_080 0.0753404479 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
6 Hb_024071_020 0.0776984014 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
7 Hb_003126_050 0.0810973006 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
8 Hb_000059_330 0.08248424 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
9 Hb_000041_270 0.0831214883 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
10 Hb_004046_050 0.0832798576 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
11 Hb_000610_050 0.0832887105 - - skp1, putative [Ricinus communis]
12 Hb_002271_020 0.0846403966 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
13 Hb_005357_080 0.0849526682 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
14 Hb_003693_070 0.0856626134 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
15 Hb_007416_280 0.0856980658 - - conserved hypothetical protein [Ricinus communis]
16 Hb_017224_030 0.087565836 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
17 Hb_003918_010 0.0876746998 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
18 Hb_000039_220 0.0881212806 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
19 Hb_007875_030 0.0882753992 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
20 Hb_001842_100 0.0883034187 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_100 Hb_001221_100 Hb_005291_030 Hb_005291_030 Hb_001221_100--Hb_005291_030 Hb_002303_070 Hb_002303_070 Hb_001221_100--Hb_002303_070 Hb_005730_120 Hb_005730_120 Hb_001221_100--Hb_005730_120 Hb_010417_080 Hb_010417_080 Hb_001221_100--Hb_010417_080 Hb_024071_020 Hb_024071_020 Hb_001221_100--Hb_024071_020 Hb_003126_050 Hb_003126_050 Hb_001221_100--Hb_003126_050 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_001599_040 Hb_001599_040 Hb_002303_070--Hb_001599_040 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_004577_020 Hb_004577_020 Hb_010417_080--Hb_004577_020 Hb_005064_060 Hb_005064_060 Hb_010417_080--Hb_005064_060 Hb_004046_050 Hb_004046_050 Hb_010417_080--Hb_004046_050 Hb_011218_040 Hb_011218_040 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
204.936 148.862 141.399 173.457 139.545 231.098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
247.415 246.17 134.511 177.593 64.6837

CAGE analysis