Hb_001221_110

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig1221: 77479-80264
Sequence    

Annotation

kegg
ID rcu:RCOM_1506520
description brg-1 associated factor, putative
nr
ID KDP30927.1
description hypothetical protein JCGZ_11303 [Jatropha curcas]
swissprot
ID Q9FMT4
description SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1
trembl
ID A0A067K474
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11303 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06708: 77519-80235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_110 0.0 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
2 Hb_001359_050 0.0519743069 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000649_110 0.0639150971 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
4 Hb_000484_130 0.0650678182 - - splicing factor, putative [Ricinus communis]
5 Hb_000173_280 0.0665293894 - - Speckle-type POZ protein, putative [Ricinus communis]
6 Hb_164390_010 0.0677426739 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
7 Hb_024958_010 0.0701492387 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
8 Hb_000738_020 0.0712290178 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002110_080 0.0715305308 - - FH interacting protein 1 [Theobroma cacao]
10 Hb_002936_010 0.072346183 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
11 Hb_006059_040 0.0747771181 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
12 Hb_000028_370 0.0767861519 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
13 Hb_006570_080 0.0777134278 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
14 Hb_008725_230 0.0777841892 - - PREDICTED: CTP synthase [Jatropha curcas]
15 Hb_013738_020 0.0781492558 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_005116_060 0.0788710562 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
17 Hb_012239_020 0.078920789 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
18 Hb_000087_060 0.0796683849 - - protein transporter, putative [Ricinus communis]
19 Hb_001221_430 0.0809176191 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
20 Hb_002205_110 0.0811501464 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001221_110 Hb_001221_110 Hb_001359_050 Hb_001359_050 Hb_001221_110--Hb_001359_050 Hb_000649_110 Hb_000649_110 Hb_001221_110--Hb_000649_110 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_000173_280 Hb_000173_280 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_024958_010 Hb_024958_010 Hb_001221_110--Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_006570_080 Hb_006570_080 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_001359_050--Hb_000173_280 Hb_000028_370 Hb_000028_370 Hb_000649_110--Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000649_110--Hb_002205_110 Hb_000649_110--Hb_008725_230 Hb_000649_110--Hb_001359_050 Hb_000886_050 Hb_000886_050 Hb_000649_110--Hb_000886_050 Hb_022256_020 Hb_022256_020 Hb_000484_130--Hb_022256_020 Hb_000484_130--Hb_001359_050 Hb_003849_110 Hb_003849_110 Hb_000484_130--Hb_003849_110 Hb_012239_020 Hb_012239_020 Hb_000484_130--Hb_012239_020 Hb_000484_130--Hb_003464_090 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_000173_280--Hb_164390_010 Hb_000173_280--Hb_006570_080 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060 Hb_000365_230 Hb_000365_230 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_002936_010 Hb_002936_010 Hb_024958_010--Hb_002936_010 Hb_000684_380 Hb_000684_380 Hb_024958_010--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_024958_010--Hb_002320_040 Hb_024958_010--Hb_008725_230 Hb_024958_010--Hb_006570_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06852 12.2346 10.1843 10.2665 6.00118 7.34056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.59176 10.9695 6.74613 9.94895 5.69821

CAGE analysis