Hb_001221_140

Information

Type -
Description -
Location Contig1221: 98778-102762
Sequence    

Annotation

kegg
ID rcu:RCOM_1506500
description DNA binding protein, putative
nr
ID XP_002511195.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAH0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1506500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06709: 98894-102783
cDNA
(Sanger)
(ID:Location)		 019_H22.ab1: 99042-102780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_140 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_003939_040 0.1092386091 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
3 Hb_007380_140 0.1376495474 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
4 Hb_000077_220 0.1398049197 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
5 Hb_001882_130 0.1416836628 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
6 Hb_178968_050 0.1425668014 - - PREDICTED: probable serine incorporator [Jatropha curcas]
7 Hb_008247_020 0.1453065995 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
8 Hb_000635_200 0.1462676045 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
9 Hb_009367_080 0.1464963951 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
10 Hb_027136_010 0.1482783896 - - hypothetical protein L484_010426 [Morus notabilis]
11 Hb_002686_040 0.1489577616 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
12 Hb_000256_020 0.1492537725 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
13 Hb_004097_120 0.15035539 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_002784_030 0.1515192789 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
15 Hb_002374_210 0.1518997582 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
16 Hb_002375_110 0.1530328052 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
17 Hb_132840_100 0.1531163588 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
18 Hb_001440_040 0.1552450965 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
19 Hb_000037_220 0.1556560948 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
20 Hb_001638_300 0.1557295638 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_140 Hb_001221_140 Hb_003939_040 Hb_003939_040 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_000077_220 Hb_000077_220 Hb_001221_140--Hb_000077_220 Hb_001882_130 Hb_001882_130 Hb_001221_140--Hb_001882_130 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020 Hb_000680_110 Hb_000680_110 Hb_003939_040--Hb_000680_110 Hb_000037_220 Hb_000037_220 Hb_003939_040--Hb_000037_220 Hb_000556_220 Hb_000556_220 Hb_003939_040--Hb_000556_220 Hb_000094_310 Hb_000094_310 Hb_003939_040--Hb_000094_310 Hb_004531_120 Hb_004531_120 Hb_003939_040--Hb_004531_120 Hb_011202_020 Hb_011202_020 Hb_003939_040--Hb_011202_020 Hb_142218_020 Hb_142218_020 Hb_007380_140--Hb_142218_020 Hb_002686_040 Hb_002686_040 Hb_007380_140--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_007380_140--Hb_005723_020 Hb_010272_010 Hb_010272_010 Hb_007380_140--Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_007380_140--Hb_005946_210 Hb_158604_010 Hb_158604_010 Hb_007380_140--Hb_158604_010 Hb_002814_060 Hb_002814_060 Hb_000077_220--Hb_002814_060 Hb_143960_010 Hb_143960_010 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000106_020 Hb_000106_020 Hb_000077_220--Hb_000106_020 Hb_002478_030 Hb_002478_030 Hb_001882_130--Hb_002478_030 Hb_004097_120 Hb_004097_120 Hb_001882_130--Hb_004097_120 Hb_001882_130--Hb_003939_040 Hb_028472_010 Hb_028472_010 Hb_001882_130--Hb_028472_010 Hb_000635_200 Hb_000635_200 Hb_001882_130--Hb_000635_200 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_000130_020 Hb_000130_020 Hb_178968_050--Hb_000130_020 Hb_140049_080 Hb_140049_080 Hb_178968_050--Hb_140049_080 Hb_000365_030 Hb_000365_030 Hb_178968_050--Hb_000365_030 Hb_178968_050--Hb_002686_040 Hb_004109_370 Hb_004109_370 Hb_178968_050--Hb_004109_370 Hb_000317_510 Hb_000317_510 Hb_008247_020--Hb_000317_510 Hb_053079_020 Hb_053079_020 Hb_008247_020--Hb_053079_020 Hb_000739_180 Hb_000739_180 Hb_008247_020--Hb_000739_180 Hb_103747_020 Hb_103747_020 Hb_008247_020--Hb_103747_020 Hb_007929_080 Hb_007929_080 Hb_008247_020--Hb_007929_080 Hb_001405_190 Hb_001405_190 Hb_008247_020--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5175 15.5189 15.3223 16.2959 15.7766 18.0778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.75658 1.74255 14.1879 15.6592 10.2206

CAGE analysis