Hb_001221_170

Information

Type -
Description -
Location Contig1221: 118056-120176
Sequence    

Annotation

kegg
ID cic:CICLE_v10019093mg
description hypothetical protein
nr
ID XP_012079839.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
swissprot
ID Q9FK33
description Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1
trembl
ID A0A067KF79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06714: 120374-120483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
2 Hb_019654_100 0.0963598066 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
3 Hb_153258_010 0.1046420292 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
4 Hb_010795_010 0.1132574739 - - protein with unknown function [Ricinus communis]
5 Hb_000041_150 0.1132976926 - - Stachyose synthase precursor, putative [Ricinus communis]
6 Hb_003862_050 0.1173084871 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
7 Hb_001245_070 0.1179576775 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
8 Hb_000619_080 0.1179932922 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
9 Hb_188279_010 0.1199429618 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
10 Hb_000187_090 0.1226260783 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
11 Hb_175338_030 0.1235888166 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_013405_030 0.1247039928 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002518_140 0.1287032231 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
14 Hb_000907_080 0.1293183761 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
15 Hb_001975_160 0.1306920255 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_001085_170 0.1314266639 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
17 Hb_000761_020 0.1322009846 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
18 Hb_000436_070 0.1327189372 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
19 Hb_024071_010 0.1338923791 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_007558_140 0.1344928078 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001221_170 Hb_001221_170 Hb_019654_100 Hb_019654_100 Hb_001221_170--Hb_019654_100 Hb_153258_010 Hb_153258_010 Hb_001221_170--Hb_153258_010 Hb_010795_010 Hb_010795_010 Hb_001221_170--Hb_010795_010 Hb_000041_150 Hb_000041_150 Hb_001221_170--Hb_000041_150 Hb_003862_050 Hb_003862_050 Hb_001221_170--Hb_003862_050 Hb_001245_070 Hb_001245_070 Hb_001221_170--Hb_001245_070 Hb_019654_100--Hb_003862_050 Hb_000754_060 Hb_000754_060 Hb_019654_100--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_019654_100--Hb_000120_950 Hb_019654_100--Hb_010795_010 Hb_175338_030 Hb_175338_030 Hb_019654_100--Hb_175338_030 Hb_000436_070 Hb_000436_070 Hb_019654_100--Hb_000436_070 Hb_153258_010--Hb_000041_150 Hb_007558_140 Hb_007558_140 Hb_153258_010--Hb_007558_140 Hb_000120_050 Hb_000120_050 Hb_153258_010--Hb_000120_050 Hb_000997_210 Hb_000997_210 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_002518_140 Hb_002518_140 Hb_010795_010--Hb_002518_140 Hb_000030_010 Hb_000030_010 Hb_010795_010--Hb_000030_010 Hb_171900_080 Hb_171900_080 Hb_010795_010--Hb_171900_080 Hb_000123_120 Hb_000123_120 Hb_010795_010--Hb_000123_120 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_127003_010 Hb_127003_010 Hb_000041_150--Hb_127003_010 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_000041_150--Hb_000120_050 Hb_000175_460 Hb_000175_460 Hb_003862_050--Hb_000175_460 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_124315_020 Hb_124315_020 Hb_001245_070--Hb_124315_020 Hb_000661_050 Hb_000661_050 Hb_001245_070--Hb_000661_050 Hb_001245_070--Hb_175338_030 Hb_000453_170 Hb_000453_170 Hb_001245_070--Hb_000453_170 Hb_001245_070--Hb_000392_300 Hb_000244_250 Hb_000244_250 Hb_001245_070--Hb_000244_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3975 15.1791 14.2943 8.36425 29.8425 21.9596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9223 13.2462 51.7056 8.24471 14.1261

CAGE analysis