Hb_001221_180

Information

Type -
Description -
Location Contig1221: 121796-136751
Sequence    

Annotation

kegg
ID rcu:RCOM_1506240
description hydrolase, putative
nr
ID AGL44408.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q5MAU8
description Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana GN=PAP27 PE=2 SV=1
trembl
ID V9NC17
description Purple acid phosphatase OS=Manihot esculenta GN=PAP27 PE=2 SV=1
Gene Ontology
ID GO:0003993
description probable inactive purple acid phosphatase 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06715: 121688-127172 , PASA_asmbl_06716: 131094-136861 , PASA_asmbl_06717: 131268-136838 , PASA_asmbl_06718: 133147-136838 , PASA_asmbl_06719: 135741-136838
cDNA
(Sanger)
(ID:Location)		 017_E09.ab1: 135747-136838 , 030_O05.ab1: 135741-136838 , 041_E19.ab1: 134513-136838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_180 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_002357_070 0.0529345033 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
3 Hb_000011_270 0.058193718 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
4 Hb_019840_030 0.0664058375 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
5 Hb_060980_010 0.0671813023 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_003093_040 0.0694246981 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
7 Hb_000568_050 0.0714676475 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
8 Hb_012055_110 0.0718624346 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
9 Hb_001999_140 0.074074402 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_088144_020 0.0743982706 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
11 Hb_027506_010 0.0758700861 - - PREDICTED: cullin-4 [Jatropha curcas]
12 Hb_000103_570 0.077090566 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
13 Hb_001953_120 0.0777095268 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
14 Hb_000009_030 0.079458741 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
15 Hb_027472_220 0.0796980673 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
16 Hb_007245_020 0.0799513781 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
17 Hb_000879_040 0.0805752566 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
18 Hb_002046_010 0.0810222287 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000934_210 0.0811559487 - - suppressor of ty, putative [Ricinus communis]
20 Hb_000996_020 0.0824049243 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_180 Hb_001221_180 Hb_002357_070 Hb_002357_070 Hb_001221_180--Hb_002357_070 Hb_000011_270 Hb_000011_270 Hb_001221_180--Hb_000011_270 Hb_019840_030 Hb_019840_030 Hb_001221_180--Hb_019840_030 Hb_060980_010 Hb_060980_010 Hb_001221_180--Hb_060980_010 Hb_003093_040 Hb_003093_040 Hb_001221_180--Hb_003093_040 Hb_000568_050 Hb_000568_050 Hb_001221_180--Hb_000568_050 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_123531_010 Hb_123531_010 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110 Hb_000011_270--Hb_003093_040 Hb_000011_270--Hb_000568_050 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_060980_010--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_060980_010--Hb_000001_170 Hb_003093_040--Hb_000175_410 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_002374_230 Hb_002374_230 Hb_003093_040--Hb_002374_230 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.77448 14.5326 14.4076 11.2297 10.9779 8.58147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.7143 5.57104 6.38867 19.3834 17.6743

CAGE analysis