Hb_001221_190

Information

Type -
Description -
Location Contig1221: 140103-141481
Sequence    

Annotation

kegg
ID rcu:RCOM_1506210
description hypothetical protein
nr
ID XP_012079835.1
description PREDICTED: F-box protein At5g50450 [Jatropha curcas]
swissprot
ID Q9FK27
description F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2 SV=1
trembl
ID A0A067K3V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11292 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06720: 140056-141393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_190 0.0 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
2 Hb_009838_020 0.1467618964 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
3 Hb_004899_340 0.1539728535 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_001711_080 0.1567797191 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
5 Hb_004545_180 0.1608502421 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_001221_200 0.1626851035 - - -
7 Hb_000023_270 0.1764012957 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011021_010 0.1820212495 - - kinase, putative [Ricinus communis]
9 Hb_022149_020 0.1895750231 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000347_190 0.1948947304 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
11 Hb_005479_010 0.2044932444 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
12 Hb_001675_050 0.2046013467 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
13 Hb_001623_080 0.2087511375 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_007192_020 0.2097084168 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
15 Hb_005799_020 0.2098151327 - - PREDICTED: bidirectional sugar transporter SWEET6b [Jatropha curcas]
16 Hb_006693_040 0.2107718779 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
17 Hb_000556_010 0.2134372986 - - glycerate dehydrogenase, putative [Ricinus communis]
18 Hb_000866_340 0.2137833084 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000977_290 0.213796457 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
20 Hb_001976_060 0.2144401308 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_190 Hb_001221_190 Hb_009838_020 Hb_009838_020 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001711_080 Hb_001711_080 Hb_001221_190--Hb_001711_080 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180 Hb_001221_200 Hb_001221_200 Hb_001221_190--Hb_001221_200 Hb_000023_270 Hb_000023_270 Hb_001221_190--Hb_000023_270 Hb_009838_020--Hb_004899_340 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_000071_160 Hb_000071_160 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_011021_010 Hb_011021_010 Hb_004899_340--Hb_011021_010 Hb_001969_140 Hb_001969_140 Hb_004899_340--Hb_001969_140 Hb_001623_080 Hb_001623_080 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_014361_090 Hb_014361_090 Hb_004899_340--Hb_014361_090 Hb_001711_080--Hb_005941_030 Hb_001711_080--Hb_004899_340 Hb_001711_080--Hb_009838_020 Hb_025645_020 Hb_025645_020 Hb_001711_080--Hb_025645_020 Hb_001711_080--Hb_014361_090 Hb_009249_020 Hb_009249_020 Hb_004545_180--Hb_009249_020 Hb_000422_070 Hb_000422_070 Hb_004545_180--Hb_000422_070 Hb_022149_020 Hb_022149_020 Hb_004545_180--Hb_022149_020 Hb_004545_180--Hb_009838_020 Hb_004545_180--Hb_001711_080 Hb_000866_340 Hb_000866_340 Hb_001221_200--Hb_000866_340 Hb_181838_010 Hb_181838_010 Hb_001221_200--Hb_181838_010 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_005063_080 Hb_005063_080 Hb_001221_200--Hb_005063_080 Hb_000023_270--Hb_022149_020 Hb_005976_070 Hb_005976_070 Hb_000023_270--Hb_005976_070 Hb_001252_030 Hb_001252_030 Hb_000023_270--Hb_001252_030 Hb_000347_190 Hb_000347_190 Hb_000023_270--Hb_000347_190 Hb_071079_020 Hb_071079_020 Hb_000023_270--Hb_071079_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.23254 0.304016 1.82998 4.37294 1.20073 1.77626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0417356 0.131317 0.0609964 0.315767 3.59611

CAGE analysis