Hb_001221_200

Information

Type -
Description -
Location Contig1221: 140106-140417
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_200 0.0 - - -
2 Hb_000866_340 0.1361269416 - - DNA binding protein, putative [Ricinus communis]
3 Hb_181838_010 0.1568851352 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
4 Hb_001221_190 0.1626851035 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
5 Hb_000977_290 0.1804923429 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
6 Hb_000261_400 0.187601929 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
7 Hb_005063_080 0.1944803104 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_000505_080 0.1969096573 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
9 Hb_000350_030 0.1971470514 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
10 Hb_000088_150 0.1995089879 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
11 Hb_009838_020 0.202337206 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
12 Hb_000260_590 0.2062392443 - - electron transporter, putative [Ricinus communis]
13 Hb_001793_050 0.2068030877 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
14 Hb_000347_190 0.2083368415 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
15 Hb_001348_090 0.208926079 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
16 Hb_015531_030 0.2096608409 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001675_050 0.2120336005 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
18 Hb_007192_020 0.2128212597 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
19 Hb_000023_270 0.2134890946 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005656_070 0.2135796963 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001221_200 Hb_001221_200 Hb_000866_340 Hb_000866_340 Hb_001221_200--Hb_000866_340 Hb_181838_010 Hb_181838_010 Hb_001221_200--Hb_181838_010 Hb_001221_190 Hb_001221_190 Hb_001221_200--Hb_001221_190 Hb_000977_290 Hb_000977_290 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_005063_080 Hb_005063_080 Hb_001221_200--Hb_005063_080 Hb_000866_340--Hb_000977_290 Hb_015531_030 Hb_015531_030 Hb_000866_340--Hb_015531_030 Hb_150651_020 Hb_150651_020 Hb_000866_340--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_000866_340--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_000866_340--Hb_004705_070 Hb_000350_030 Hb_000350_030 Hb_181838_010--Hb_000350_030 Hb_001163_020 Hb_001163_020 Hb_181838_010--Hb_001163_020 Hb_001348_090 Hb_001348_090 Hb_181838_010--Hb_001348_090 Hb_004242_170 Hb_004242_170 Hb_181838_010--Hb_004242_170 Hb_001793_050 Hb_001793_050 Hb_181838_010--Hb_001793_050 Hb_009838_020 Hb_009838_020 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001711_080 Hb_001711_080 Hb_001221_190--Hb_001711_080 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180 Hb_000023_270 Hb_000023_270 Hb_001221_190--Hb_000023_270 Hb_010984_020 Hb_010984_020 Hb_000977_290--Hb_010984_020 Hb_000959_300 Hb_000959_300 Hb_000977_290--Hb_000959_300 Hb_007192_020 Hb_007192_020 Hb_000977_290--Hb_007192_020 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_004710_020 Hb_004710_020 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180 Hb_003053_050 Hb_003053_050 Hb_000261_400--Hb_003053_050 Hb_005799_020 Hb_005799_020 Hb_000261_400--Hb_005799_020 Hb_000031_230 Hb_000031_230 Hb_000261_400--Hb_000031_230 Hb_008092_060 Hb_008092_060 Hb_000261_400--Hb_008092_060 Hb_001087_010 Hb_001087_010 Hb_000261_400--Hb_001087_010 Hb_005618_150 Hb_005618_150 Hb_005063_080--Hb_005618_150 Hb_000665_270 Hb_000665_270 Hb_005063_080--Hb_000665_270 Hb_001907_070 Hb_001907_070 Hb_005063_080--Hb_001907_070 Hb_006911_070 Hb_006911_070 Hb_005063_080--Hb_006911_070 Hb_006198_130 Hb_006198_130 Hb_005063_080--Hb_006198_130 Hb_000336_200 Hb_000336_200 Hb_005063_080--Hb_000336_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.918371 1.30184 8.76219 8.50895 2.22675 6.66589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.679503 0.2674 0 1.10886 11.818

CAGE analysis