Hb_001221_210

Information

Type -
Description -
Location Contig1221: 148492-153920
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10840g
description POPTRDRAFT_733616; thiF family protein
nr
ID XP_002321704.1
description thiF family protein [Populus trichocarpa]
swissprot
ID O23034
description Ubiquitin-like modifier-activating enzyme 5 OS=Arabidopsis thaliana GN=At1g05350 PE=3 SV=2
trembl
ID B9IFB7
description ThiF family protein OS=Populus trichocarpa GN=POPTR_0015s10840g PE=4 SV=1
Gene Ontology
ID GO:0008641
description ubiquitin-like modifier-activating enzyme 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06721: 148502-153931 , PASA_asmbl_06722: 148482-149394 , PASA_asmbl_06724: 149818-149981 , PASA_asmbl_06725: 149986-150095
cDNA
(Sanger)
(ID:Location)		 012_B02.ab1: 148484-149394 , 043_C18.ab1: 148484-149394

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_210 0.0 - - thiF family protein [Populus trichocarpa]
2 Hb_001633_050 0.0680179282 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
3 Hb_002995_020 0.0693500044 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
4 Hb_000020_060 0.075769965 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
5 Hb_004116_190 0.0784779086 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_000329_200 0.0803514266 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
7 Hb_001504_110 0.0808287036 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
8 Hb_000656_240 0.0820257429 - - proteasome subunit alpha type, putative [Ricinus communis]
9 Hb_000236_040 0.084975885 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
10 Hb_000205_090 0.0875798448 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
11 Hb_000580_090 0.0878563956 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
12 Hb_001662_150 0.0887687295 - - Scaffold attachment factor B1 [Medicago truncatula]
13 Hb_000505_040 0.0900356836 - - -
14 Hb_000025_620 0.0902063139 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
15 Hb_002226_060 0.0926514819 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
16 Hb_001105_030 0.0927674477 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
17 Hb_002056_050 0.0930146895 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
18 Hb_000976_430 0.0943680985 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
19 Hb_017225_020 0.0946605024 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
20 Hb_003018_010 0.0949664808 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001221_210 Hb_001221_210 Hb_001633_050 Hb_001633_050 Hb_001221_210--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_001221_210--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_001221_210--Hb_000020_060 Hb_004116_190 Hb_004116_190 Hb_001221_210--Hb_004116_190 Hb_000329_200 Hb_000329_200 Hb_001221_210--Hb_000329_200 Hb_001504_110 Hb_001504_110 Hb_001221_210--Hb_001504_110 Hb_001633_050--Hb_004116_190 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_000656_240 Hb_000656_240 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030 Hb_002995_020--Hb_004116_190 Hb_002995_020--Hb_000020_060 Hb_003787_010 Hb_003787_010 Hb_002995_020--Hb_003787_010 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_004116_190--Hb_000656_240 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_010361_010 Hb_010361_010 Hb_000329_200--Hb_010361_010 Hb_024650_070 Hb_024650_070 Hb_000329_200--Hb_024650_070 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_017225_020 Hb_017225_020 Hb_000329_200--Hb_017225_020 Hb_000329_200--Hb_000656_240 Hb_001504_110--Hb_000656_240 Hb_000025_620 Hb_000025_620 Hb_001504_110--Hb_000025_620 Hb_001504_110--Hb_004116_190 Hb_001504_110--Hb_000020_060 Hb_000127_180 Hb_000127_180 Hb_001504_110--Hb_000127_180 Hb_000920_110 Hb_000920_110 Hb_001504_110--Hb_000920_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.0116 17.414 50.4797 25.9362 43.5387 37.0535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.6497 93.5117 62.092 53.5429 26.2563

CAGE analysis