Hb_001221_230

Information

Type -
Description -
Location Contig1221: 169597-176403
Sequence    

Annotation

kegg
ID rcu:RCOM_1506040
description hypothetical protein
nr
ID XP_002511180.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06732: 170568-174270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000035_380 0.0696773192 - - -
3 Hb_000317_430 0.074120228 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
4 Hb_010128_130 0.0744810227 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
5 Hb_000032_570 0.0762624993 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
6 Hb_001214_130 0.0765456258 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
7 Hb_001741_140 0.0770585899 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_118419_020 0.0771606611 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
9 Hb_000322_050 0.0786924948 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
10 Hb_004204_200 0.0808959394 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
11 Hb_003728_020 0.0822934384 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000847_070 0.0851352436 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
13 Hb_143813_010 0.086551439 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
14 Hb_010810_050 0.0867706466 - - hypothetical protein [Cleome spinosa]
15 Hb_004195_160 0.0868570415 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
16 Hb_001030_120 0.0870135327 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_134226_010 0.0875705135 - - 40S ribosomal protein S21e, putative [Ricinus communis]
18 Hb_000365_360 0.0877218588 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_003120_060 0.0881336293 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
20 Hb_000019_230 0.0885914229 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001221_230 Hb_001221_230 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_010128_130 Hb_010128_130 Hb_001221_230--Hb_010128_130 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001214_130 Hb_001214_130 Hb_001221_230--Hb_001214_130 Hb_001741_140 Hb_001741_140 Hb_001221_230--Hb_001741_140 Hb_000035_380--Hb_000317_430 Hb_060809_010 Hb_060809_010 Hb_000035_380--Hb_060809_010 Hb_000365_360 Hb_000365_360 Hb_000035_380--Hb_000365_360 Hb_118419_020 Hb_118419_020 Hb_000035_380--Hb_118419_020 Hb_000035_380--Hb_001214_130 Hb_000175_070 Hb_000175_070 Hb_000317_430--Hb_000175_070 Hb_000317_430--Hb_118419_020 Hb_000317_430--Hb_060809_010 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_028639_060 Hb_028639_060 Hb_001214_130--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_001214_130--Hb_003642_060 Hb_000905_190 Hb_000905_190 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_001741_140--Hb_000905_190 Hb_001741_140--Hb_000107_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7496 3.05019 1.66836 2.6283 11.8638 14.2796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24743 11.355 6.32556 4.74029 1.84847

CAGE analysis