Hb_001221_240

Information

Type -
Description -
Location Contig1221: 177047-178000
Sequence    

Annotation

kegg
ID rcu:RCOM_1506030
description hypothetical protein
nr
ID XP_002511179.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID B9RAF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06735: 177128-177554 , PASA_asmbl_06736: 178546-178930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_042463_010 0.1489316011 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
3 Hb_159308_020 0.1491188658 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
4 Hb_000552_010 0.1502537641 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
5 Hb_000975_170 0.1575753901 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
6 Hb_002400_300 0.1593647651 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
7 Hb_001832_170 0.1663586424 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
8 Hb_000920_100 0.1701057231 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000417_220 0.1709581517 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
10 Hb_094437_030 0.1797615496 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
11 Hb_044380_010 0.1808315475 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
12 Hb_010620_030 0.1814630658 - - beta-amyrin synthase [Euphorbia tirucalli]
13 Hb_006483_120 0.184431474 - - DNA binding protein, putative [Ricinus communis]
14 Hb_006920_020 0.1897418042 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_000254_080 0.1897555506 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
16 Hb_003714_030 0.1900302883 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_001195_380 0.1922590931 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
18 Hb_094437_020 0.1943493139 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_000061_290 0.1979926394 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001097_140 0.1988930056 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001221_240 Hb_001221_240 Hb_042463_010 Hb_042463_010 Hb_001221_240--Hb_042463_010 Hb_159308_020 Hb_159308_020 Hb_001221_240--Hb_159308_020 Hb_000552_010 Hb_000552_010 Hb_001221_240--Hb_000552_010 Hb_000975_170 Hb_000975_170 Hb_001221_240--Hb_000975_170 Hb_002400_300 Hb_002400_300 Hb_001221_240--Hb_002400_300 Hb_001832_170 Hb_001832_170 Hb_001221_240--Hb_001832_170 Hb_016734_040 Hb_016734_040 Hb_042463_010--Hb_016734_040 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_000920_100 Hb_000920_100 Hb_042463_010--Hb_000920_100 Hb_169948_010 Hb_169948_010 Hb_042463_010--Hb_169948_010 Hb_006483_120 Hb_006483_120 Hb_042463_010--Hb_006483_120 Hb_159308_020--Hb_000975_170 Hb_182424_020 Hb_182424_020 Hb_159308_020--Hb_182424_020 Hb_000035_020 Hb_000035_020 Hb_159308_020--Hb_000035_020 Hb_005092_070 Hb_005092_070 Hb_159308_020--Hb_005092_070 Hb_025161_030 Hb_025161_030 Hb_159308_020--Hb_025161_030 Hb_000552_010--Hb_001832_170 Hb_000552_010--Hb_002400_300 Hb_010620_030 Hb_010620_030 Hb_000552_010--Hb_010620_030 Hb_000552_010--Hb_000920_100 Hb_000176_050 Hb_000176_050 Hb_000552_010--Hb_000176_050 Hb_000975_170--Hb_002400_300 Hb_000975_170--Hb_182424_020 Hb_000309_070 Hb_000309_070 Hb_000975_170--Hb_000309_070 Hb_114917_010 Hb_114917_010 Hb_000975_170--Hb_114917_010 Hb_031330_020 Hb_031330_020 Hb_000975_170--Hb_031330_020 Hb_091236_010 Hb_091236_010 Hb_002400_300--Hb_091236_010 Hb_006920_020 Hb_006920_020 Hb_002400_300--Hb_006920_020 Hb_000122_230 Hb_000122_230 Hb_002400_300--Hb_000122_230 Hb_002400_300--Hb_001832_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_000417_220 Hb_000417_220 Hb_001832_170--Hb_000417_220 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.340394 1.37548 0.626505 10.1408 0.273087 0.492716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161268 0.126831 0.698102 2.43409 17.151

CAGE analysis