Hb_001221_310

Information

Type -
Description -
Location Contig1221: 223666-225719
Sequence    

Annotation

kegg
ID rcu:RCOM_1505970
description sec61 gamma subunit, putative
nr
ID XP_002511173.1
description sec61 gamma subunit, putative [Ricinus communis]
swissprot
ID P38385
description Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 SV=1
trembl
ID B9RAE8
description Sec61 gamma subunit, putative OS=Ricinus communis GN=RCOM_1505970 PE=3 SV=1
Gene Ontology
ID GO:0005886
description protein transport protein sec61 subunit gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06738: 223690-225690
cDNA
(Sanger)
(ID:Location)		 008_I13.ab1: 223795-225687 , 012_A02.ab1: 223746-225662 , 031_J04.ab1: 223707-225662

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_310 0.0 - - sec61 gamma subunit, putative [Ricinus communis]
2 Hb_000312_090 0.0547054415 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
3 Hb_000699_160 0.0700343396 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
4 Hb_006452_040 0.0745451896 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
5 Hb_000617_090 0.0747512615 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
6 Hb_010672_060 0.0806637704 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_001155_040 0.0841484021 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
8 Hb_002431_050 0.0859092869 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
9 Hb_019516_100 0.0875641883 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_009851_100 0.0892714848 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
11 Hb_000948_220 0.0933584609 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
12 Hb_143496_010 0.0943955962 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
13 Hb_000272_050 0.09525119 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
14 Hb_003226_210 0.0973828932 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
15 Hb_000915_120 0.0976257355 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
16 Hb_007317_160 0.0984128093 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
17 Hb_002835_320 0.0987605991 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_000062_390 0.0990978096 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
19 Hb_026398_010 0.0991448981 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
20 Hb_000317_070 0.0995956905 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001221_310 Hb_001221_310 Hb_000312_090 Hb_000312_090 Hb_001221_310--Hb_000312_090 Hb_000699_160 Hb_000699_160 Hb_001221_310--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_001221_310--Hb_006452_040 Hb_000617_090 Hb_000617_090 Hb_001221_310--Hb_000617_090 Hb_010672_060 Hb_010672_060 Hb_001221_310--Hb_010672_060 Hb_001155_040 Hb_001155_040 Hb_001221_310--Hb_001155_040 Hb_000312_090--Hb_000617_090 Hb_009851_100 Hb_009851_100 Hb_000312_090--Hb_009851_100 Hb_003125_150 Hb_003125_150 Hb_000312_090--Hb_003125_150 Hb_001045_080 Hb_001045_080 Hb_000312_090--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_000699_160--Hb_010672_060 Hb_005063_050 Hb_005063_050 Hb_000699_160--Hb_005063_050 Hb_143496_010 Hb_143496_010 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020 Hb_003018_050 Hb_003018_050 Hb_006452_040--Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_006452_040--Hb_002631_020 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_000617_090--Hb_003125_150 Hb_002431_050 Hb_002431_050 Hb_010672_060--Hb_002431_050 Hb_010672_060--Hb_005063_050 Hb_003893_050 Hb_003893_050 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_007416_020 Hb_007416_020 Hb_010672_060--Hb_007416_020 Hb_000087_130 Hb_000087_130 Hb_001155_040--Hb_000087_130 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.931 27.1647 87.5146 169.931 107.645 117.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
351.438 554.118 168.162 84.9512 50.2693

CAGE analysis