Hb_001221_340

Information

Type -
Description -
Location Contig1221: 243496-244936
Sequence    

Annotation

kegg
ID pop:POPTR_0017s09650g
description hypothetical protein
nr
ID KCW83147.1
description hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CXP6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00102 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_340 0.0 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
2 Hb_001452_210 0.1391204132 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
3 Hb_007973_010 0.141022138 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
4 Hb_002131_030 0.1432243951 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
5 Hb_002908_060 0.1499776982 - - unnamed protein product, partial [Coffea canephora]
6 Hb_000053_060 0.1513995956 - - hypothetical protein VITISV_022618 [Vitis vinifera]
7 Hb_001953_080 0.1596855171 - - pseudouridine synthase family protein, partial [Manihot esculenta]
8 Hb_163975_010 0.1609121862 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
9 Hb_052764_110 0.1661369795 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
10 Hb_012022_050 0.1727153575 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
11 Hb_000197_220 0.1737117208 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
12 Hb_007023_030 0.1737289287 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
13 Hb_004303_040 0.1742469519 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
14 Hb_007383_020 0.1767651942 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000227_070 0.1772170507 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
16 Hb_003606_060 0.1780949531 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
17 Hb_003098_080 0.1782955015 - - -
18 Hb_000258_140 0.1787225005 - - conserved hypothetical protein [Ricinus communis]
19 Hb_084670_010 0.1798217579 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000510_240 0.1799679588 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001221_340 Hb_001221_340 Hb_001452_210 Hb_001452_210 Hb_001221_340--Hb_001452_210 Hb_007973_010 Hb_007973_010 Hb_001221_340--Hb_007973_010 Hb_002131_030 Hb_002131_030 Hb_001221_340--Hb_002131_030 Hb_002908_060 Hb_002908_060 Hb_001221_340--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_001221_340--Hb_000053_060 Hb_001953_080 Hb_001953_080 Hb_001221_340--Hb_001953_080 Hb_052764_110 Hb_052764_110 Hb_001452_210--Hb_052764_110 Hb_098315_080 Hb_098315_080 Hb_001452_210--Hb_098315_080 Hb_000227_070 Hb_000227_070 Hb_001452_210--Hb_000227_070 Hb_179924_010 Hb_179924_010 Hb_001452_210--Hb_179924_010 Hb_003098_080 Hb_003098_080 Hb_001452_210--Hb_003098_080 Hb_007973_010--Hb_052764_110 Hb_004317_060 Hb_004317_060 Hb_007973_010--Hb_004317_060 Hb_008447_040 Hb_008447_040 Hb_007973_010--Hb_008447_040 Hb_004785_080 Hb_004785_080 Hb_007973_010--Hb_004785_080 Hb_000270_390 Hb_000270_390 Hb_007973_010--Hb_000270_390 Hb_000197_220 Hb_000197_220 Hb_002131_030--Hb_000197_220 Hb_000203_140 Hb_000203_140 Hb_002131_030--Hb_000203_140 Hb_100886_010 Hb_100886_010 Hb_002131_030--Hb_100886_010 Hb_002338_050 Hb_002338_050 Hb_002131_030--Hb_002338_050 Hb_000510_240 Hb_000510_240 Hb_002131_030--Hb_000510_240 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_002908_060--Hb_000053_060 Hb_001673_100 Hb_001673_100 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_002908_060--Hb_003098_080 Hb_000053_060--Hb_098315_080 Hb_007023_030 Hb_007023_030 Hb_000053_060--Hb_007023_030 Hb_000183_030 Hb_000183_030 Hb_000053_060--Hb_000183_030 Hb_004411_060 Hb_004411_060 Hb_000053_060--Hb_004411_060 Hb_000053_060--Hb_052764_110 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108238 0.173331 0.166708 0.651322 0.146304 0.799228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.446085 0.779667 0.359188 1.12826 1.35747

CAGE analysis