Hb_001221_360

Information

Type -
Description -
Location Contig1221: 251775-252707
Sequence    

Annotation

kegg
ID rcu:RCOM_0840150
description late embryogenesis abundant, putative
nr
ID XP_002528631.1
description late embryogenesis abundant, putative [Ricinus communis]
swissprot
ID P20075
description Embryonic protein DC-8 OS=Daucus carota PE=3 SV=1
trembl
ID B9SRL2
description Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0840150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_360 0.0 - - late embryogenesis abundant, putative [Ricinus communis]
2 Hb_006940_020 0.1267796226 - - polyprotein [Oryza australiensis]
3 Hb_000997_140 0.1413739605 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
4 Hb_010565_030 0.1570442814 - - hypothetical protein VITISV_006810 [Vitis vinifera]
5 Hb_003029_140 0.1590368245 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
6 Hb_140389_010 0.16239721 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_007576_150 0.1666332209 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
8 Hb_005542_010 0.1670833845 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
9 Hb_001250_020 0.167727841 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
10 Hb_065525_070 0.1714588231 - - unnamed protein product [Homo sapiens]
11 Hb_002395_020 0.1723563692 - - Protein CREG1 precursor, putative [Ricinus communis]
12 Hb_002016_050 0.1725319291 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
13 Hb_015778_060 0.1759841723 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
14 Hb_005917_030 0.1761838105 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003077_130 0.1784991631 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
16 Hb_004109_130 0.178921541 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
17 Hb_001080_030 0.1790588914 - - AMP dependent ligase, putative [Ricinus communis]
18 Hb_002078_270 0.1801170228 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
19 Hb_018043_020 0.1810649214 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
20 Hb_000212_370 0.1815794228 - - thioredoxin f-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001221_360 Hb_001221_360 Hb_006940_020 Hb_006940_020 Hb_001221_360--Hb_006940_020 Hb_000997_140 Hb_000997_140 Hb_001221_360--Hb_000997_140 Hb_010565_030 Hb_010565_030 Hb_001221_360--Hb_010565_030 Hb_003029_140 Hb_003029_140 Hb_001221_360--Hb_003029_140 Hb_140389_010 Hb_140389_010 Hb_001221_360--Hb_140389_010 Hb_007576_150 Hb_007576_150 Hb_001221_360--Hb_007576_150 Hb_006940_020--Hb_010565_030 Hb_003687_160 Hb_003687_160 Hb_006940_020--Hb_003687_160 Hb_003020_300 Hb_003020_300 Hb_006940_020--Hb_003020_300 Hb_000173_110 Hb_000173_110 Hb_006940_020--Hb_000173_110 Hb_004242_120 Hb_004242_120 Hb_006940_020--Hb_004242_120 Hb_028707_110 Hb_028707_110 Hb_000997_140--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000997_140--Hb_003077_130 Hb_000997_140--Hb_003029_140 Hb_003929_220 Hb_003929_220 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_005542_010 Hb_005542_010 Hb_010565_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_010565_030--Hb_011472_050 Hb_010565_030--Hb_000173_110 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_003029_140--Hb_018043_020 Hb_003029_140--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_003029_140--Hb_008616_040 Hb_021409_190 Hb_021409_190 Hb_003029_140--Hb_021409_190 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_006277_080 Hb_006277_080 Hb_140389_010--Hb_006277_080 Hb_000574_320 Hb_000574_320 Hb_140389_010--Hb_000574_320 Hb_012539_040 Hb_012539_040 Hb_140389_010--Hb_012539_040 Hb_005015_020 Hb_005015_020 Hb_140389_010--Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_140389_010--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_140389_010--Hb_005288_180 Hb_000934_020 Hb_000934_020 Hb_007576_150--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_007576_150--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_007576_150--Hb_000640_260 Hb_007576_150--Hb_003029_140 Hb_001890_010 Hb_001890_010 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292634 1.13094 0.5941 0.326725 0.13157 0.281449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0610101 0.287861 0.0873653 0.348671 2.61923

CAGE analysis