Hb_001221_380

Information

Type -
Description -
Location Contig1221: 258129-261059
Sequence    

Annotation

kegg
ID tcc:TCM_014655
description Uncharacterized protein isoform 1
nr
ID XP_012090682.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
swissprot
ID Q9FMV4
description Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana GN=MED30 PE=1 SV=1
trembl
ID A0A067JFJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26438 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_380 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
2 Hb_000723_310 0.1703170227 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001616_020 0.1813270777 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
4 Hb_000061_480 0.1881910263 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
5 Hb_151930_020 0.1888910867 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
6 Hb_007477_090 0.1920977406 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
7 Hb_002876_360 0.1971710729 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
8 Hb_000676_240 0.1982797005 - - thioredoxin H-type 2 [Hevea brasiliensis]
9 Hb_001214_030 0.2046671319 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
10 Hb_009252_130 0.2053295825 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
11 Hb_000190_060 0.2074986104 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
12 Hb_000696_220 0.2085833991 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
13 Hb_000144_110 0.2096355634 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
14 Hb_011310_060 0.2102397433 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
15 Hb_011689_050 0.2104852752 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
16 Hb_003638_080 0.2118152335 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
17 Hb_000617_050 0.2124073854 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
18 Hb_010362_020 0.2163222893 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
19 Hb_000661_240 0.2176181583 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
20 Hb_000326_010 0.2176451711 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]

Gene co-expression network

sample Hb_001221_380 Hb_001221_380 Hb_000723_310 Hb_000723_310 Hb_001221_380--Hb_000723_310 Hb_001616_020 Hb_001616_020 Hb_001221_380--Hb_001616_020 Hb_000061_480 Hb_000061_480 Hb_001221_380--Hb_000061_480 Hb_151930_020 Hb_151930_020 Hb_001221_380--Hb_151930_020 Hb_007477_090 Hb_007477_090 Hb_001221_380--Hb_007477_090 Hb_002876_360 Hb_002876_360 Hb_001221_380--Hb_002876_360 Hb_000723_310--Hb_007477_090 Hb_029580_010 Hb_029580_010 Hb_000723_310--Hb_029580_010 Hb_011310_060 Hb_011310_060 Hb_000723_310--Hb_011310_060 Hb_000777_060 Hb_000777_060 Hb_000723_310--Hb_000777_060 Hb_008557_020 Hb_008557_020 Hb_000723_310--Hb_008557_020 Hb_009252_130 Hb_009252_130 Hb_001616_020--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_004958_050 Hb_004958_050 Hb_001616_020--Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_001616_020--Hb_002234_210 Hb_000144_110 Hb_000144_110 Hb_001616_020--Hb_000144_110 Hb_001616_020--Hb_151930_020 Hb_000190_060 Hb_000190_060 Hb_000061_480--Hb_000190_060 Hb_000061_480--Hb_009252_130 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000703_140 Hb_000703_140 Hb_000061_480--Hb_000703_140 Hb_001214_030 Hb_001214_030 Hb_000061_480--Hb_001214_030 Hb_000531_020 Hb_000531_020 Hb_000061_480--Hb_000531_020 Hb_151930_020--Hb_007477_090 Hb_007441_180 Hb_007441_180 Hb_151930_020--Hb_007441_180 Hb_001821_120 Hb_001821_120 Hb_151930_020--Hb_001821_120 Hb_000580_160 Hb_000580_160 Hb_151930_020--Hb_000580_160 Hb_151930_020--Hb_011310_060 Hb_007477_090--Hb_000777_060 Hb_004055_060 Hb_004055_060 Hb_007477_090--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_007477_090--Hb_001279_250 Hb_010362_020 Hb_010362_020 Hb_007477_090--Hb_010362_020 Hb_000853_360 Hb_000853_360 Hb_007477_090--Hb_000853_360 Hb_000617_050 Hb_000617_050 Hb_002876_360--Hb_000617_050 Hb_002326_180 Hb_002326_180 Hb_002876_360--Hb_002326_180 Hb_000106_090 Hb_000106_090 Hb_002876_360--Hb_000106_090 Hb_003638_080 Hb_003638_080 Hb_002876_360--Hb_003638_080 Hb_000395_240 Hb_000395_240 Hb_002876_360--Hb_000395_240 Hb_000035_440 Hb_000035_440 Hb_002876_360--Hb_000035_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18975 0.165604 0.976878 0.542689 4.80582 1.13857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7875 11.1012 2.37218 0.175412 0.292659

CAGE analysis