Hb_001221_400

Information

Type -
Description -
Location Contig1221: 265239-271108
Sequence    

Annotation

kegg
ID rcu:RCOM_1505790
description hypothetical protein
nr
ID XP_012090679.1
description PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
swissprot
ID P0DH79
description CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=1 SV=1
trembl
ID A0A067JRJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06749: 265480-267766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_400 0.0 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
2 Hb_002010_110 0.1057458658 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
3 Hb_000140_060 0.1273488689 - - 50S ribosomal protein L5, putative [Ricinus communis]
4 Hb_002811_050 0.1328408271 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
5 Hb_012799_190 0.1346789201 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
6 Hb_000056_110 0.1419155966 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
7 Hb_003006_090 0.1454137384 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
8 Hb_000538_300 0.1470293292 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
9 Hb_020400_020 0.1499529519 - - starch synthase isoform II [Manihot esculenta]
10 Hb_002783_030 0.1579282129 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
11 Hb_000099_170 0.1585779297 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
12 Hb_003226_250 0.1598929752 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
13 Hb_002542_060 0.1626562557 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
14 Hb_005488_130 0.1650045431 - - transporter, putative [Ricinus communis]
15 Hb_000349_200 0.1671417468 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
16 Hb_001579_150 0.1685690591 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002026_030 0.1686290728 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_001677_040 0.170731261 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
19 Hb_000208_270 0.1718935452 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
20 Hb_020378_020 0.1729952556 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001221_400 Hb_001221_400 Hb_002010_110 Hb_002010_110 Hb_001221_400--Hb_002010_110 Hb_000140_060 Hb_000140_060 Hb_001221_400--Hb_000140_060 Hb_002811_050 Hb_002811_050 Hb_001221_400--Hb_002811_050 Hb_012799_190 Hb_012799_190 Hb_001221_400--Hb_012799_190 Hb_000056_110 Hb_000056_110 Hb_001221_400--Hb_000056_110 Hb_003006_090 Hb_003006_090 Hb_001221_400--Hb_003006_090 Hb_003494_130 Hb_003494_130 Hb_002010_110--Hb_003494_130 Hb_020400_020 Hb_020400_020 Hb_002010_110--Hb_020400_020 Hb_002010_110--Hb_012799_190 Hb_001579_150 Hb_001579_150 Hb_002010_110--Hb_001579_150 Hb_000762_110 Hb_000762_110 Hb_002010_110--Hb_000762_110 Hb_000069_360 Hb_000069_360 Hb_000140_060--Hb_000069_360 Hb_003994_080 Hb_003994_080 Hb_000140_060--Hb_003994_080 Hb_000422_080 Hb_000422_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000099_170 Hb_000099_170 Hb_000140_060--Hb_000099_170 Hb_007982_040 Hb_007982_040 Hb_002811_050--Hb_007982_040 Hb_002811_050--Hb_000099_170 Hb_000264_280 Hb_000264_280 Hb_002811_050--Hb_000264_280 Hb_071079_020 Hb_071079_020 Hb_002811_050--Hb_071079_020 Hb_000208_270 Hb_000208_270 Hb_002811_050--Hb_000208_270 Hb_005181_120 Hb_005181_120 Hb_002811_050--Hb_005181_120 Hb_004242_170 Hb_004242_170 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_001053_020 Hb_001053_020 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_000976_130 Hb_000976_130 Hb_012799_190--Hb_000976_130 Hb_012799_190--Hb_000762_110 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_001252_030 Hb_001252_030 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003462_040 Hb_003462_040 Hb_003006_090--Hb_003462_040 Hb_003006_090--Hb_001195_660 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.681203 3.75753 3.78071 7.05806 0.251568 1.12118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.963719 0.814509 0.669164 0.418275 10.5947

CAGE analysis