Hb_001221_460

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1221: 308685-309608
Sequence    

Annotation

kegg
ID rcu:RCOM_1505570
description WRKY transcription factor, putative
nr
ID XP_002511154.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9FYA2
description Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1
trembl
ID B9RAC9
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1505570 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 75

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06765: 308989-309441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_460 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_028271_010 0.182883032 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
3 Hb_017170_010 0.2076686035 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
4 Hb_033834_050 0.2556729156 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003847_020 0.2633144856 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_012754_030 0.2711562606 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
7 Hb_026687_010 0.2736124763 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
8 Hb_011609_110 0.2849523272 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
9 Hb_086692_020 0.2864511395 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
10 Hb_003398_140 0.2870538721 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_004414_040 0.288148113 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
12 Hb_002908_070 0.2997321748 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
13 Hb_028271_020 0.3001040878 - - acyl-CoA oxidase, putative [Ricinus communis]
14 Hb_000563_310 0.3078559217 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
15 Hb_007477_040 0.3087708646 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_014497_080 0.3106268486 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
17 Hb_041405_010 0.3116268473 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
18 Hb_001591_010 0.3119171975 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
19 Hb_000062_300 0.3155057719 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
20 Hb_001449_100 0.315568879 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_460 Hb_001221_460 Hb_028271_010 Hb_028271_010 Hb_001221_460--Hb_028271_010 Hb_017170_010 Hb_017170_010 Hb_001221_460--Hb_017170_010 Hb_033834_050 Hb_033834_050 Hb_001221_460--Hb_033834_050 Hb_003847_020 Hb_003847_020 Hb_001221_460--Hb_003847_020 Hb_012754_030 Hb_012754_030 Hb_001221_460--Hb_012754_030 Hb_026687_010 Hb_026687_010 Hb_001221_460--Hb_026687_010 Hb_028271_010--Hb_017170_010 Hb_002641_110 Hb_002641_110 Hb_028271_010--Hb_002641_110 Hb_001102_100 Hb_001102_100 Hb_028271_010--Hb_001102_100 Hb_028271_010--Hb_012754_030 Hb_004414_040 Hb_004414_040 Hb_028271_010--Hb_004414_040 Hb_041405_010 Hb_041405_010 Hb_017170_010--Hb_041405_010 Hb_096292_010 Hb_096292_010 Hb_017170_010--Hb_096292_010 Hb_187134_010 Hb_187134_010 Hb_017170_010--Hb_187134_010 Hb_007273_010 Hb_007273_010 Hb_017170_010--Hb_007273_010 Hb_002784_100 Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_033834_050--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_033834_050--Hb_042871_010 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_000094_110 Hb_000094_110 Hb_003847_020--Hb_000094_110 Hb_003847_020--Hb_026687_010 Hb_003398_140 Hb_003398_140 Hb_003847_020--Hb_003398_140 Hb_003992_080 Hb_003992_080 Hb_003847_020--Hb_003992_080 Hb_001052_030 Hb_001052_030 Hb_003847_020--Hb_001052_030 Hb_000340_440 Hb_000340_440 Hb_003847_020--Hb_000340_440 Hb_000563_310 Hb_000563_310 Hb_012754_030--Hb_000563_310 Hb_012754_030--Hb_003398_140 Hb_012754_030--Hb_000340_440 Hb_009680_040 Hb_009680_040 Hb_012754_030--Hb_009680_040 Hb_012754_030--Hb_026687_010 Hb_026687_010--Hb_003398_140 Hb_026687_010--Hb_028271_020 Hb_000099_070 Hb_000099_070 Hb_026687_010--Hb_000099_070 Hb_026687_010--Hb_003992_080 Hb_026687_010--Hb_000094_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64332 3.62924 0.114165 0.744428 1.14827 1.24243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33205 38.911 1.70672 11.7394 0

CAGE analysis