Hb_001221_480

Information

Type -
Description -
Location Contig1221: 320599-322434
Sequence    

Annotation

kegg
ID rcu:RCOM_1505530
description metal ion binding protein, putative
nr
ID XP_002511150.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9RAC5
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1505530 PE=4 SV=1
Gene Ontology
ID GO:0046872
description superoxide dismutase 1 copper chaperone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06766: 320625-322552
cDNA
(Sanger)
(ID:Location)		 047_A01.ab1: 321291-322520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_480 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_003807_020 0.0857864869 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
3 Hb_000649_030 0.10253721 - - scab resistance family protein [Populus trichocarpa]
4 Hb_004447_020 0.1083603203 - - carbohydrate binding protein, putative [Ricinus communis]
5 Hb_111582_010 0.1131706484 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
6 Hb_000335_050 0.1138951618 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
7 Hb_001454_410 0.1163382765 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
8 Hb_000852_050 0.1200200879 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
9 Hb_002805_150 0.1218623438 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_000616_050 0.1224820818 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
11 Hb_008695_130 0.1230988149 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010174_170 0.1231387963 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
13 Hb_000579_180 0.1267773778 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
14 Hb_012753_200 0.1275948486 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
15 Hb_003031_030 0.1276919894 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
16 Hb_000407_080 0.1280990788 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
17 Hb_006711_020 0.1293530993 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
18 Hb_000237_150 0.1300151576 - - Epoxide hydrolase 2 [Morus notabilis]
19 Hb_001514_210 0.1306717469 - - hypothetical protein VITISV_012133 [Vitis vinifera]
20 Hb_002391_350 0.1309469331 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_480 Hb_001221_480 Hb_003807_020 Hb_003807_020 Hb_001221_480--Hb_003807_020 Hb_000649_030 Hb_000649_030 Hb_001221_480--Hb_000649_030 Hb_004447_020 Hb_004447_020 Hb_001221_480--Hb_004447_020 Hb_111582_010 Hb_111582_010 Hb_001221_480--Hb_111582_010 Hb_000335_050 Hb_000335_050 Hb_001221_480--Hb_000335_050 Hb_001454_410 Hb_001454_410 Hb_001221_480--Hb_001454_410 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_003807_020--Hb_004447_020 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_000237_150 Hb_000237_150 Hb_000649_030--Hb_000237_150 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000238_060 Hb_000238_060 Hb_000649_030--Hb_000238_060 Hb_000616_050 Hb_000616_050 Hb_000649_030--Hb_000616_050 Hb_019229_020 Hb_019229_020 Hb_000649_030--Hb_019229_020 Hb_000649_030--Hb_111582_010 Hb_004447_020--Hb_000335_050 Hb_003376_200 Hb_003376_200 Hb_004447_020--Hb_003376_200 Hb_002805_150 Hb_002805_150 Hb_004447_020--Hb_002805_150 Hb_004447_020--Hb_000579_180 Hb_012753_200 Hb_012753_200 Hb_004447_020--Hb_012753_200 Hb_111582_010--Hb_003807_020 Hb_111582_010--Hb_009581_050 Hb_111582_010--Hb_000335_050 Hb_010926_010 Hb_010926_010 Hb_111582_010--Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_009581_050 Hb_000335_050--Hb_002391_350 Hb_000335_050--Hb_000579_180 Hb_000181_160 Hb_000181_160 Hb_001454_410--Hb_000181_160 Hb_003453_030 Hb_003453_030 Hb_001454_410--Hb_003453_030 Hb_008695_130 Hb_008695_130 Hb_001454_410--Hb_008695_130 Hb_001454_410--Hb_003807_020 Hb_001408_050 Hb_001408_050 Hb_001454_410--Hb_001408_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41142 85.8092 28.0252 45.1744 1.23032 1.15095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.558017 0.472694 0 162.073 6.68997

CAGE analysis