Hb_001221_510

Information

Type -
Description -
Location Contig1221: 347752-349957
Sequence    

Annotation

kegg
ID rcu:RCOM_1505500
description Protein HVA22, putative
nr
ID XP_002511147.1
description Protein HVA22, putative [Ricinus communis]
swissprot
ID Q9FED2
description HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1
trembl
ID B9RAC2
description HVA22-like protein OS=Ricinus communis GN=RCOM_1505500 PE=3 SV=1
Gene Ontology
ID GO:0016021
description hva22-like protein e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06768: 348308-349786
cDNA
(Sanger)
(ID:Location)		 040_B01.ab1: 348308-349786

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_510 0.0 - - Protein HVA22, putative [Ricinus communis]
2 Hb_116264_010 0.1065257129 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
3 Hb_000491_090 0.1152245514 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
4 Hb_111648_010 0.136150992 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
5 Hb_001396_220 0.1382086128 - - nuclear transport factor, putative [Ricinus communis]
6 Hb_004448_020 0.146580184 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
7 Hb_000048_050 0.1524537575 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
8 Hb_100777_010 0.1529634377 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
9 Hb_001173_040 0.1529808159 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_000032_220 0.1540187089 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
11 Hb_074590_010 0.1555504849 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
12 Hb_002352_010 0.1572406205 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
13 Hb_012395_200 0.1620295738 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001369_050 0.1623560612 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
15 Hb_001473_130 0.1632220723 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
16 Hb_000387_100 0.164312254 - - -
17 Hb_001754_010 0.1659311403 - - translationally controlled tumor protein [Hevea brasiliensis]
18 Hb_002660_160 0.1665907627 - - protein binding protein, putative [Ricinus communis]
19 Hb_007594_090 0.1670233906 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
20 Hb_001008_010 0.167248703 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_001221_510 Hb_001221_510 Hb_116264_010 Hb_116264_010 Hb_001221_510--Hb_116264_010 Hb_000491_090 Hb_000491_090 Hb_001221_510--Hb_000491_090 Hb_111648_010 Hb_111648_010 Hb_001221_510--Hb_111648_010 Hb_001396_220 Hb_001396_220 Hb_001221_510--Hb_001396_220 Hb_004448_020 Hb_004448_020 Hb_001221_510--Hb_004448_020 Hb_000048_050 Hb_000048_050 Hb_001221_510--Hb_000048_050 Hb_116264_010--Hb_111648_010 Hb_004410_010 Hb_004410_010 Hb_116264_010--Hb_004410_010 Hb_002660_160 Hb_002660_160 Hb_116264_010--Hb_002660_160 Hb_000032_220 Hb_000032_220 Hb_116264_010--Hb_000032_220 Hb_002352_010 Hb_002352_010 Hb_116264_010--Hb_002352_010 Hb_015057_010 Hb_015057_010 Hb_000491_090--Hb_015057_010 Hb_000491_090--Hb_004448_020 Hb_000380_010 Hb_000380_010 Hb_000491_090--Hb_000380_010 Hb_001173_040 Hb_001173_040 Hb_000491_090--Hb_001173_040 Hb_100777_010 Hb_100777_010 Hb_000491_090--Hb_100777_010 Hb_001514_180 Hb_001514_180 Hb_111648_010--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_111648_010--Hb_000041_070 Hb_000078_010 Hb_000078_010 Hb_111648_010--Hb_000078_010 Hb_024505_040 Hb_024505_040 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030 Hb_001396_220--Hb_000032_220 Hb_001473_130 Hb_001473_130 Hb_001396_220--Hb_001473_130 Hb_015934_020 Hb_015934_020 Hb_001396_220--Hb_015934_020 Hb_001396_220--Hb_002352_010 Hb_005000_290 Hb_005000_290 Hb_001396_220--Hb_005000_290 Hb_000329_600 Hb_000329_600 Hb_001396_220--Hb_000329_600 Hb_011671_220 Hb_011671_220 Hb_004448_020--Hb_011671_220 Hb_000963_190 Hb_000963_190 Hb_004448_020--Hb_000963_190 Hb_004448_020--Hb_015057_010 Hb_005656_050 Hb_005656_050 Hb_004448_020--Hb_005656_050 Hb_009558_020 Hb_009558_020 Hb_004448_020--Hb_009558_020 Hb_000048_050--Hb_001473_130 Hb_000048_050--Hb_002352_010 Hb_084849_020 Hb_084849_020 Hb_000048_050--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_000048_050--Hb_001369_050 Hb_002025_320 Hb_002025_320 Hb_000048_050--Hb_002025_320 Hb_004899_320 Hb_004899_320 Hb_000048_050--Hb_004899_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.9678 7.90388 1.29593 13.2784 31.1238 192.062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
173.944 131.46 155.721 19.8934 19.7554

CAGE analysis