Hb_001221_520

Information

Type -
Description -
Location Contig1221: 354533-355129
Sequence    

Annotation

kegg
ID rcu:RCOM_1505490
description hypothetical protein
nr
ID XP_002511146.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAC1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_520 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005363_010 0.1622244743 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
3 Hb_009557_050 0.196344559 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
4 Hb_004241_200 0.2031509145 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
5 Hb_008406_030 0.2163341946 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
6 Hb_001507_030 0.2188979487 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
7 Hb_005227_050 0.2201851536 - - conserved hypothetical protein [Ricinus communis]
8 Hb_131684_010 0.2217919791 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000164_010 0.2223750391 - - small heat-shock protein, putative [Ricinus communis]
10 Hb_001999_240 0.2261879592 - - PREDICTED: josephin-like protein [Populus euphratica]
11 Hb_023768_020 0.227704267 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003952_080 0.2281304747 - - zinc finger protein, putative [Ricinus communis]
13 Hb_003209_090 0.229279644 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
14 Hb_000016_150 0.2320936437 - - PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
15 Hb_118094_010 0.2342159678 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
16 Hb_002450_030 0.2375616545 - - ATPP2-A13, putative [Ricinus communis]
17 Hb_001511_190 0.2418553173 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
18 Hb_093084_020 0.2434164656 - - PREDICTED: lysM domain receptor-like kinase 3 [Populus euphratica]
19 Hb_000813_160 0.2439407531 - - hypothetical protein PRUPE_ppa013181mg [Prunus persica]
20 Hb_122940_010 0.2440960176 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_001221_520 Hb_001221_520 Hb_005363_010 Hb_005363_010 Hb_001221_520--Hb_005363_010 Hb_009557_050 Hb_009557_050 Hb_001221_520--Hb_009557_050 Hb_004241_200 Hb_004241_200 Hb_001221_520--Hb_004241_200 Hb_008406_030 Hb_008406_030 Hb_001221_520--Hb_008406_030 Hb_001507_030 Hb_001507_030 Hb_001221_520--Hb_001507_030 Hb_005227_050 Hb_005227_050 Hb_001221_520--Hb_005227_050 Hb_118094_010 Hb_118094_010 Hb_005363_010--Hb_118094_010 Hb_005363_010--Hb_001507_030 Hb_001999_240 Hb_001999_240 Hb_005363_010--Hb_001999_240 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_009557_050--Hb_008406_030 Hb_009557_050--Hb_004241_200 Hb_000003_760 Hb_000003_760 Hb_009557_050--Hb_000003_760 Hb_001472_140 Hb_001472_140 Hb_009557_050--Hb_001472_140 Hb_002234_130 Hb_002234_130 Hb_009557_050--Hb_002234_130 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_004241_200--Hb_008406_030 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_001195_650 Hb_001195_650 Hb_004241_200--Hb_001195_650 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_008406_030--Hb_001472_140 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_003952_080 Hb_003952_080 Hb_005227_050--Hb_003952_080 Hb_003226_130 Hb_003226_130 Hb_005227_050--Hb_003226_130 Hb_004157_060 Hb_004157_060 Hb_005227_050--Hb_004157_060 Hb_000313_280 Hb_000313_280 Hb_005227_050--Hb_000313_280 Hb_001810_040 Hb_001810_040 Hb_005227_050--Hb_001810_040 Hb_003906_150 Hb_003906_150 Hb_005227_050--Hb_003906_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.73217 0.985939 7.66761 0.121893 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46731 1.26789 0.579085 0.433582 0.851204

CAGE analysis