Hb_001221_550

Information

Type -
Description -
Location Contig1221: 366922-368825
Sequence    

Annotation

kegg
ID rcu:RCOM_1505470
description Corticosteroid 11-beta-dehydrogenase, putative (EC:1.1.1.146)
nr
ID XP_002511144.1
description Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
swissprot
ID Q8T197
description Dehydrogenase/reductase SDR family protein 7-like OS=Dictyostelium discoideum GN=DDB_G0274201 PE=3 SV=1
trembl
ID B9RAB9
description Corticosteroid 11-beta-dehydrogenase, putative OS=Ricinus communis GN=RCOM_1505470 PE=3 SV=1
Gene Ontology
ID GO:0016491
description 11-beta-hydroxysteroid dehydrogenase-like 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06771: 367654-368142 , PASA_asmbl_06772: 366942-368801 , PASA_asmbl_06773: 366942-368801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_550 0.0 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
2 Hb_002893_220 0.0435077324 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
3 Hb_006586_060 0.0561598942 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_000130_340 0.0637628598 - - -
5 Hb_000735_190 0.0699654789 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
6 Hb_003592_040 0.070503305 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
7 Hb_102129_040 0.071569808 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
8 Hb_002259_120 0.077052074 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_001671_070 0.0780174586 - - kinase, putative [Ricinus communis]
10 Hb_000160_260 0.0792168382 - - nutrient reservoir, putative [Ricinus communis]
11 Hb_000167_150 0.0847509317 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
12 Hb_000496_100 0.08727638 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
13 Hb_006594_030 0.0872881852 - - -
14 Hb_000751_010 0.087526221 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000136_120 0.088005886 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
16 Hb_028486_020 0.0904917941 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000144_130 0.0924342082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_167188_020 0.0932742827 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
19 Hb_000510_250 0.0936243415 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
20 Hb_102900_010 0.0946149869 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_550 Hb_001221_550 Hb_002893_220 Hb_002893_220 Hb_001221_550--Hb_002893_220 Hb_006586_060 Hb_006586_060 Hb_001221_550--Hb_006586_060 Hb_000130_340 Hb_000130_340 Hb_001221_550--Hb_000130_340 Hb_000735_190 Hb_000735_190 Hb_001221_550--Hb_000735_190 Hb_003592_040 Hb_003592_040 Hb_001221_550--Hb_003592_040 Hb_102129_040 Hb_102129_040 Hb_001221_550--Hb_102129_040 Hb_167188_020 Hb_167188_020 Hb_002893_220--Hb_167188_020 Hb_002259_120 Hb_002259_120 Hb_002893_220--Hb_002259_120 Hb_002893_220--Hb_000130_340 Hb_000816_180 Hb_000816_180 Hb_002893_220--Hb_000816_180 Hb_002893_220--Hb_003592_040 Hb_006586_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_006586_060--Hb_000751_010 Hb_006586_060--Hb_000735_190 Hb_000167_150 Hb_000167_150 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_000130_340--Hb_002259_120 Hb_007617_030 Hb_007617_030 Hb_000130_340--Hb_007617_030 Hb_006594_030 Hb_006594_030 Hb_000130_340--Hb_006594_030 Hb_001646_030 Hb_001646_030 Hb_000130_340--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_000130_340--Hb_000739_010 Hb_031377_010 Hb_031377_010 Hb_000130_340--Hb_031377_010 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_000735_190--Hb_102129_040 Hb_003411_070 Hb_003411_070 Hb_000735_190--Hb_003411_070 Hb_000735_190--Hb_000751_010 Hb_000735_190--Hb_000167_150 Hb_001386_060 Hb_001386_060 Hb_003592_040--Hb_001386_060 Hb_003592_040--Hb_006586_060 Hb_003090_020 Hb_003090_020 Hb_003592_040--Hb_003090_020 Hb_001856_190 Hb_001856_190 Hb_003592_040--Hb_001856_190 Hb_102129_040--Hb_000751_010 Hb_102900_010 Hb_102900_010 Hb_102129_040--Hb_102900_010 Hb_001329_060 Hb_001329_060 Hb_102129_040--Hb_001329_060 Hb_102129_040--Hb_000167_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0124082 58.8458 17.0812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0341373 0.0268555 0.1006 0 18.1979

CAGE analysis