Hb_001223_010

Information

Type -
Description -
Location Contig1223: 39328-53977
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10370g
description POPTRDRAFT_262325; hypothetical protein
nr
ID XP_012089656.1
description PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
swissprot
ID Q6DCD1
description FGGY carbohydrate kinase domain-containing protein OS=Xenopus laevis GN=fggy PE=2 SV=2
trembl
ID A0A067JTQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01766 PE=4 SV=1
Gene Ontology
ID GO:0009507
description fggy carbohydrate kinase domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06801: 39387-47090 , PASA_asmbl_06802: 47095-53892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001223_010 0.0 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
2 Hb_002908_040 0.0706777597 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
3 Hb_000589_380 0.0899241184 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
4 Hb_007472_090 0.0950063849 - - unnamed protein product [Coffea canephora]
5 Hb_002639_110 0.096538013 - - hypothetical protein L484_011673 [Morus notabilis]
6 Hb_011485_060 0.1043993225 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
7 Hb_001726_100 0.1076738615 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
8 Hb_007120_060 0.1117521034 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
9 Hb_000574_530 0.1119665149 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
10 Hb_004218_250 0.1154270936 - - PREDICTED: beta-galactosidase [Jatropha curcas]
11 Hb_000800_110 0.1172235605 - - NAD dehydrogenase, putative [Ricinus communis]
12 Hb_000022_170 0.1176679398 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
13 Hb_009486_090 0.1196189705 - - RNA binding protein, putative [Ricinus communis]
14 Hb_000358_050 0.120409512 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
15 Hb_001691_200 0.1207700221 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
16 Hb_000363_300 0.1222949318 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
17 Hb_012022_060 0.123607781 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
18 Hb_004208_050 0.1247450986 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
19 Hb_015292_060 0.1270598447 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
20 Hb_000940_150 0.1271045588 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]

Gene co-expression network

sample Hb_001223_010 Hb_001223_010 Hb_002908_040 Hb_002908_040 Hb_001223_010--Hb_002908_040 Hb_000589_380 Hb_000589_380 Hb_001223_010--Hb_000589_380 Hb_007472_090 Hb_007472_090 Hb_001223_010--Hb_007472_090 Hb_002639_110 Hb_002639_110 Hb_001223_010--Hb_002639_110 Hb_011485_060 Hb_011485_060 Hb_001223_010--Hb_011485_060 Hb_001726_100 Hb_001726_100 Hb_001223_010--Hb_001726_100 Hb_002908_040--Hb_007472_090 Hb_002908_040--Hb_002639_110 Hb_004306_120 Hb_004306_120 Hb_002908_040--Hb_004306_120 Hb_002805_210 Hb_002805_210 Hb_002908_040--Hb_002805_210 Hb_001691_200 Hb_001691_200 Hb_002908_040--Hb_001691_200 Hb_000589_380--Hb_001726_100 Hb_000574_530 Hb_000574_530 Hb_000589_380--Hb_000574_530 Hb_099270_030 Hb_099270_030 Hb_000589_380--Hb_099270_030 Hb_015292_060 Hb_015292_060 Hb_000589_380--Hb_015292_060 Hb_001726_050 Hb_001726_050 Hb_000589_380--Hb_001726_050 Hb_004208_050 Hb_004208_050 Hb_007472_090--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_007472_090--Hb_000922_030 Hb_007472_090--Hb_002639_110 Hb_000358_050 Hb_000358_050 Hb_007472_090--Hb_000358_050 Hb_007441_160 Hb_007441_160 Hb_007472_090--Hb_007441_160 Hb_002639_110--Hb_011485_060 Hb_000365_240 Hb_000365_240 Hb_002639_110--Hb_000365_240 Hb_002609_080 Hb_002609_080 Hb_002639_110--Hb_002609_080 Hb_011485_060--Hb_000358_050 Hb_000890_070 Hb_000890_070 Hb_011485_060--Hb_000890_070 Hb_002213_020 Hb_002213_020 Hb_011485_060--Hb_002213_020 Hb_004048_120 Hb_004048_120 Hb_011485_060--Hb_004048_120 Hb_011485_060--Hb_004208_050 Hb_000059_240 Hb_000059_240 Hb_011485_060--Hb_000059_240 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_001726_100--Hb_001726_050 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08945 5.61879 3.41781 2.29481 2.73388 3.72074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18293 1.75614 3.50579 9.8348 9.80641

CAGE analysis