Hb_001225_040

Information

Type -
Description -
Location Contig1225: 60047-73479
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30010g
description POPTRDRAFT_550018; hypothetical protein
nr
ID XP_012093139.1
description PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GIA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30010g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06831: 60144-62241 , PASA_asmbl_06832: 67437-67709 , PASA_asmbl_06833: 68989-72164 , PASA_asmbl_06834: 72320-73811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_040 0.0 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
2 Hb_004837_180 0.051324197 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
3 Hb_005653_090 0.0528227788 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
4 Hb_006520_040 0.0546146948 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
5 Hb_005730_040 0.0591048195 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
6 Hb_003030_060 0.0628421601 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
7 Hb_011537_050 0.0640729014 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
8 Hb_005867_070 0.0641931759 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000189_600 0.0657993005 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
10 Hb_007590_020 0.0659279572 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
11 Hb_001089_030 0.0660039446 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
12 Hb_000976_140 0.0713539847 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
13 Hb_001922_150 0.0714680401 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
14 Hb_006059_040 0.074226326 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
15 Hb_000340_400 0.0747372107 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_003849_110 0.0756278477 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
17 Hb_003464_090 0.0766499969 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
18 Hb_000025_410 0.0767433499 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
19 Hb_000339_040 0.0776466351 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
20 Hb_000416_110 0.0777269192 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001225_040 Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_001225_040--Hb_004837_180 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_005730_040 Hb_005730_040 Hb_001225_040--Hb_005730_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_000331_680 Hb_000331_680 Hb_005653_090--Hb_000331_680 Hb_003464_090 Hb_003464_090 Hb_005653_090--Hb_003464_090 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_000981_030 Hb_000981_030 Hb_006520_040--Hb_000981_030 Hb_000920_300 Hb_000920_300 Hb_006520_040--Hb_000920_300 Hb_002026_210 Hb_002026_210 Hb_006520_040--Hb_002026_210 Hb_003517_040 Hb_003517_040 Hb_006520_040--Hb_003517_040 Hb_003913_070 Hb_003913_070 Hb_006520_040--Hb_003913_070 Hb_000976_140 Hb_000976_140 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_005730_040--Hb_005867_070 Hb_000708_030 Hb_000708_030 Hb_005730_040--Hb_000708_030 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_010712_050 Hb_010712_050 Hb_003030_060--Hb_010712_050 Hb_003030_060--Hb_004837_180 Hb_001080_230 Hb_001080_230 Hb_003030_060--Hb_001080_230 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_012194_030 Hb_012194_030 Hb_003030_060--Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_011537_050--Hb_000329_370 Hb_011537_050--Hb_001080_230 Hb_011537_050--Hb_003030_060 Hb_000025_410 Hb_000025_410 Hb_011537_050--Hb_000025_410 Hb_000003_190 Hb_000003_190 Hb_011537_050--Hb_000003_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.44401 8.19607 6.24031 5.28961 4.32533 6.74138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0029 6.14788 3.73723 5.92336 5.83337

CAGE analysis