Hb_001225_050

Information

Type transcription factor
Description TF Family: LIM
Location Contig1225: 73815-76038
Sequence    

Annotation

kegg
ID rcu:RCOM_0834980
description Cysteine and glycine-rich protein, putative
nr
ID XP_002532425.1
description Cysteine and glycine-rich protein, putative [Ricinus communis]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID B9T2F6
description Cysteine and glycine-rich protein, putative OS=Ricinus communis GN=RCOM_0834980 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06836: 73819-75966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_050 0.0 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
2 Hb_002997_150 0.062661768 - - hypothetical protein RCOM_1406750 [Ricinus communis]
3 Hb_135052_010 0.0922408437 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000358_060 0.0930463474 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
5 Hb_000077_250 0.0971797861 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
6 Hb_002388_070 0.0981415258 - - ring finger protein, putative [Ricinus communis]
7 Hb_011224_070 0.0992932395 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
8 Hb_004650_120 0.1050473783 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
9 Hb_004020_030 0.1052133826 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
10 Hb_000449_070 0.1063889646 - - unnamed protein product [Vitis vinifera]
11 Hb_001096_010 0.1092681936 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
12 Hb_001104_060 0.1096100876 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
13 Hb_000230_410 0.1117832883 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
14 Hb_001279_400 0.1124481315 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
15 Hb_020375_010 0.112686116 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
16 Hb_001511_220 0.1130618825 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
17 Hb_000813_070 0.1133079659 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002874_200 0.1156299206 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
19 Hb_005614_020 0.1156590277 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
20 Hb_011381_050 0.1180183661 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001225_050 Hb_001225_050 Hb_002997_150 Hb_002997_150 Hb_001225_050--Hb_002997_150 Hb_135052_010 Hb_135052_010 Hb_001225_050--Hb_135052_010 Hb_000358_060 Hb_000358_060 Hb_001225_050--Hb_000358_060 Hb_000077_250 Hb_000077_250 Hb_001225_050--Hb_000077_250 Hb_002388_070 Hb_002388_070 Hb_001225_050--Hb_002388_070 Hb_011224_070 Hb_011224_070 Hb_001225_050--Hb_011224_070 Hb_002997_150--Hb_002388_070 Hb_028514_010 Hb_028514_010 Hb_002997_150--Hb_028514_010 Hb_004020_030 Hb_004020_030 Hb_002997_150--Hb_004020_030 Hb_002997_150--Hb_000077_250 Hb_002997_150--Hb_000358_060 Hb_135052_010--Hb_011224_070 Hb_001511_220 Hb_001511_220 Hb_135052_010--Hb_001511_220 Hb_003747_160 Hb_003747_160 Hb_135052_010--Hb_003747_160 Hb_001096_010 Hb_001096_010 Hb_135052_010--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_135052_010--Hb_005614_020 Hb_001104_060 Hb_001104_060 Hb_135052_010--Hb_001104_060 Hb_000230_410 Hb_000230_410 Hb_000358_060--Hb_000230_410 Hb_001936_120 Hb_001936_120 Hb_000358_060--Hb_001936_120 Hb_000358_060--Hb_000077_250 Hb_000358_060--Hb_002388_070 Hb_020375_010 Hb_020375_010 Hb_000077_250--Hb_020375_010 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_007185_050 Hb_007185_050 Hb_000077_250--Hb_007185_050 Hb_000077_250--Hb_004020_030 Hb_009070_020 Hb_009070_020 Hb_000077_250--Hb_009070_020 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002874_200 Hb_002874_200 Hb_002388_070--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_002388_070--Hb_004032_290 Hb_002388_070--Hb_004020_030 Hb_002388_070--Hb_000230_410 Hb_011224_070--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_011224_070--Hb_001511_220 Hb_011224_070--Hb_001096_010 Hb_011224_070--Hb_005614_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32283 5.52865 10.859 64.6159 0.905929 0.126334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0504875 0 0 0.782402 28.4379

CAGE analysis