Hb_001225_080

Information

Type -
Description -
Location Contig1225: 117120-120852
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30030g
description POPTRDRAFT_707442; ADP-ribosylation factor family protein
nr
ID XP_011030335.1
description PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
swissprot
ID Q5ZKQ8
description ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1
trembl
ID B9GIA4
description ADP-ribosylation factor family protein OS=Populus trichocarpa GN=POPTR_0001s30030g PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 8a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06840: 119796-120361 , PASA_asmbl_06841: 118477-118886 , PASA_asmbl_06843: 102567-120696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_080 0.0 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
2 Hb_001703_060 0.0693787639 - - protein kinase, putative [Ricinus communis]
3 Hb_007101_300 0.0719825253 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
4 Hb_000030_030 0.0785777543 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
5 Hb_000406_080 0.0815397814 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
6 Hb_000331_200 0.0822491919 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
7 Hb_000032_380 0.0827219043 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001427_160 0.0857911018 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000417_040 0.0892546557 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
10 Hb_154948_040 0.0900128857 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
11 Hb_168978_010 0.0901010784 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
12 Hb_004934_100 0.0902423952 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004108_070 0.0903582913 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
14 Hb_001278_100 0.0915393342 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
15 Hb_094836_010 0.0926024016 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
16 Hb_011344_120 0.0927228736 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
17 Hb_000200_020 0.0937129641 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
18 Hb_000510_300 0.0938566652 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
19 Hb_002641_060 0.0943417479 - - prefoldin subunit, putative [Ricinus communis]
20 Hb_000347_240 0.0944078185 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001225_080 Hb_001225_080 Hb_001703_060 Hb_001703_060 Hb_001225_080--Hb_001703_060 Hb_007101_300 Hb_007101_300 Hb_001225_080--Hb_007101_300 Hb_000030_030 Hb_000030_030 Hb_001225_080--Hb_000030_030 Hb_000406_080 Hb_000406_080 Hb_001225_080--Hb_000406_080 Hb_000331_200 Hb_000331_200 Hb_001225_080--Hb_000331_200 Hb_000032_380 Hb_000032_380 Hb_001225_080--Hb_000032_380 Hb_001703_060--Hb_000331_200 Hb_001703_060--Hb_000030_030 Hb_000510_300 Hb_000510_300 Hb_001703_060--Hb_000510_300 Hb_001427_160 Hb_001427_160 Hb_001703_060--Hb_001427_160 Hb_000081_160 Hb_000081_160 Hb_001703_060--Hb_000081_160 Hb_003389_040 Hb_003389_040 Hb_007101_300--Hb_003389_040 Hb_007101_300--Hb_000032_380 Hb_008226_060 Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_000417_040 Hb_000417_040 Hb_007101_300--Hb_000417_040 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_005846_040 Hb_005846_040 Hb_000030_030--Hb_005846_040 Hb_003502_060 Hb_003502_060 Hb_000030_030--Hb_003502_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000030_030--Hb_003151_040 Hb_168978_010 Hb_168978_010 Hb_000030_030--Hb_168978_010 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010 Hb_000317_390 Hb_000317_390 Hb_000331_200--Hb_000317_390 Hb_006693_020 Hb_006693_020 Hb_000331_200--Hb_006693_020 Hb_004108_070 Hb_004108_070 Hb_000331_200--Hb_004108_070 Hb_001140_370 Hb_001140_370 Hb_000331_200--Hb_001140_370 Hb_000221_160 Hb_000221_160 Hb_000331_200--Hb_000221_160 Hb_000032_380--Hb_003389_040 Hb_001278_100 Hb_001278_100 Hb_000032_380--Hb_001278_100 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_000032_380--Hb_008226_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75981 10.5168 9.61058 18.8514 10.8616 13.2215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7323 18.7976 14.3229 9.33804 9.60021

CAGE analysis