Hb_001226_010

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig1226: 40987-44760
Sequence    

Annotation

kegg
ID rcu:RCOM_0706570
description hypothetical protein
nr
ID XP_002516114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQU5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_010 0.0 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
2 Hb_001322_030 0.1844732968 - - triacylglycerol lipase, putative [Ricinus communis]
3 Hb_034904_010 0.2091681694 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
4 Hb_001437_160 0.2110097774 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
5 Hb_000740_020 0.2151866136 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
6 Hb_103739_010 0.2171941176 - - sodium/hydrogen exchanger, putative [Ricinus communis]
7 Hb_007145_010 0.2182222999 - - ammonium transporter 3.1-like protein [Camellia sinensis]
8 Hb_107429_010 0.2342481817 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
9 Hb_011972_010 0.2712757054 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000111_440 0.2750053338 - - -
11 Hb_000836_150 0.2860527128 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
12 Hb_104764_020 0.3224058222 - - hypothetical protein TRIUR3_08295 [Triticum urartu]
13 Hb_011344_060 0.3225571608 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]
14 Hb_067034_020 0.3236802094 - - PREDICTED: iridoid synthase [Jatropha curcas]
15 Hb_001269_290 0.3287412758 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
16 Hb_008971_030 0.3288933546 - - conserved hypothetical protein [Ricinus communis]
17 Hb_026527_040 0.3301415446 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000155_090 0.3306043924 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
19 Hb_001439_090 0.3330988491 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001143_150 0.3342090377 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]

Gene co-expression network

sample Hb_001226_010 Hb_001226_010 Hb_001322_030 Hb_001322_030 Hb_001226_010--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001226_010--Hb_034904_010 Hb_001437_160 Hb_001437_160 Hb_001226_010--Hb_001437_160 Hb_000740_020 Hb_000740_020 Hb_001226_010--Hb_000740_020 Hb_103739_010 Hb_103739_010 Hb_001226_010--Hb_103739_010 Hb_007145_010 Hb_007145_010 Hb_001226_010--Hb_007145_010 Hb_001322_030--Hb_007145_010 Hb_011972_010 Hb_011972_010 Hb_001322_030--Hb_011972_010 Hb_001470_070 Hb_001470_070 Hb_001322_030--Hb_001470_070 Hb_001322_030--Hb_034904_010 Hb_128486_010 Hb_128486_010 Hb_001322_030--Hb_128486_010 Hb_034904_010--Hb_001470_070 Hb_034904_010--Hb_007145_010 Hb_001143_150 Hb_001143_150 Hb_034904_010--Hb_001143_150 Hb_005144_190 Hb_005144_190 Hb_034904_010--Hb_005144_190 Hb_001437_160--Hb_000740_020 Hb_107429_010 Hb_107429_010 Hb_001437_160--Hb_107429_010 Hb_000836_150 Hb_000836_150 Hb_001437_160--Hb_000836_150 Hb_001437_160--Hb_103739_010 Hb_011344_060 Hb_011344_060 Hb_001437_160--Hb_011344_060 Hb_000740_020--Hb_107429_010 Hb_000740_020--Hb_000836_150 Hb_000740_020--Hb_001143_150 Hb_000917_170 Hb_000917_170 Hb_000740_020--Hb_000917_170 Hb_001401_100 Hb_001401_100 Hb_103739_010--Hb_001401_100 Hb_001439_090 Hb_001439_090 Hb_103739_010--Hb_001439_090 Hb_002890_080 Hb_002890_080 Hb_103739_010--Hb_002890_080 Hb_000152_310 Hb_000152_310 Hb_103739_010--Hb_000152_310 Hb_007145_010--Hb_001470_070 Hb_007145_010--Hb_011972_010 Hb_040359_010 Hb_040359_010 Hb_007145_010--Hb_040359_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0104364 0.0316494 0.0319059 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0564326 0 0 0

CAGE analysis