Hb_001226_110

Information

Type -
Description -
Location Contig1226: 135755-139696
Sequence    

Annotation

kegg
ID cic:CICLE_v10007288mg
description hypothetical protein
nr
ID XP_012077229.1
description PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06858: 135741-137408 , PASA_asmbl_06860: 138404-139339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_110 0.0 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
2 Hb_005649_080 0.0638216325 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
3 Hb_001103_090 0.0753642368 - - PREDICTED: patellin-3 [Populus euphratica]
4 Hb_009476_120 0.0778395592 - - Clathrin heavy chain 1 [Glycine soja]
5 Hb_000358_220 0.0816876715 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
6 Hb_170077_010 0.0823101655 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
7 Hb_000358_100 0.0838486236 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
8 Hb_000020_160 0.0848264623 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
9 Hb_000347_300 0.0860172033 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
10 Hb_001414_010 0.0885120709 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
11 Hb_008165_020 0.0892032286 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
12 Hb_000300_030 0.0893485423 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
13 Hb_002005_030 0.0901785539 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
14 Hb_011457_140 0.091633161 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
15 Hb_000367_020 0.0924789848 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
16 Hb_007245_020 0.0951783024 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
17 Hb_005000_090 0.0952623478 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
18 Hb_001054_120 0.0963143156 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
19 Hb_000066_150 0.0968760153 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
20 Hb_000331_100 0.097001456 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001226_110 Hb_001226_110 Hb_005649_080 Hb_005649_080 Hb_001226_110--Hb_005649_080 Hb_001103_090 Hb_001103_090 Hb_001226_110--Hb_001103_090 Hb_009476_120 Hb_009476_120 Hb_001226_110--Hb_009476_120 Hb_000358_220 Hb_000358_220 Hb_001226_110--Hb_000358_220 Hb_170077_010 Hb_170077_010 Hb_001226_110--Hb_170077_010 Hb_000358_100 Hb_000358_100 Hb_001226_110--Hb_000358_100 Hb_002928_190 Hb_002928_190 Hb_005649_080--Hb_002928_190 Hb_005649_080--Hb_170077_010 Hb_020805_150 Hb_020805_150 Hb_005649_080--Hb_020805_150 Hb_005649_080--Hb_000358_220 Hb_003939_060 Hb_003939_060 Hb_005649_080--Hb_003939_060 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_001414_010 Hb_001414_010 Hb_009476_120--Hb_001414_010 Hb_008165_020 Hb_008165_020 Hb_009476_120--Hb_008165_020 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000996_020 Hb_000996_020 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_000358_100--Hb_000020_160 Hb_000284_230 Hb_000284_230 Hb_000358_100--Hb_000284_230 Hb_000359_190 Hb_000359_190 Hb_000358_100--Hb_000359_190 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000172_340 Hb_000172_340 Hb_000358_100--Hb_000172_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05007 11.3286 6.23332 10.2296 4.06445 4.2022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66081 1.7971 2.89342 6.6341 9.47827

CAGE analysis