Hb_001226_130

Information

Type -
Description -
Location Contig1226: 190533-196622
Sequence    

Annotation

kegg
ID rcu:RCOM_0706340
description puromycin-sensitive aminopeptidase, putative (EC:3.4.11.2)
nr
ID XP_012077233.1
description PREDICTED: aminopeptidase M1-like [Jatropha curcas]
swissprot
ID Q8VZH2
description Aminopeptidase M1 OS=Arabidopsis thaliana GN=APM1 PE=1 SV=1
trembl
ID A0A067KP44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07636 PE=4 SV=1
Gene Ontology
ID GO:0004177
description aminopeptidase m1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06861: 190659-196653 , PASA_asmbl_06862: 194682-195038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_130 0.0 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
2 Hb_001587_030 0.0400509725 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
3 Hb_000649_060 0.0649868351 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
4 Hb_001811_170 0.0657080449 - - dynamin, putative [Ricinus communis]
5 Hb_000342_050 0.0733110729 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
6 Hb_004837_280 0.0770871287 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
7 Hb_000152_700 0.0790435086 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
8 Hb_015884_020 0.0805942218 - - PREDICTED: protein PIR [Jatropha curcas]
9 Hb_005854_040 0.0832170672 - - conserved hypothetical protein [Ricinus communis]
10 Hb_021977_010 0.0838768032 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
11 Hb_002639_030 0.0859180805 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
12 Hb_003994_220 0.0874714575 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
13 Hb_000701_030 0.0884963016 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
14 Hb_000890_070 0.0890911196 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
15 Hb_000599_360 0.0898074779 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_007933_040 0.090105442 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
17 Hb_021297_020 0.0905229024 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
18 Hb_000494_030 0.0906215558 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
19 Hb_027445_020 0.0909622536 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
20 Hb_001085_080 0.091572045 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]

Gene co-expression network

sample Hb_001226_130 Hb_001226_130 Hb_001587_030 Hb_001587_030 Hb_001226_130--Hb_001587_030 Hb_000649_060 Hb_000649_060 Hb_001226_130--Hb_000649_060 Hb_001811_170 Hb_001811_170 Hb_001226_130--Hb_001811_170 Hb_000342_050 Hb_000342_050 Hb_001226_130--Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_001226_130--Hb_004837_280 Hb_000152_700 Hb_000152_700 Hb_001226_130--Hb_000152_700 Hb_001587_030--Hb_000649_060 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_001587_030--Hb_004837_280 Hb_000890_070 Hb_000890_070 Hb_001587_030--Hb_000890_070 Hb_020805_180 Hb_020805_180 Hb_000649_060--Hb_020805_180 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000649_060--Hb_000152_700 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_000342_050--Hb_004837_280 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_000342_050--Hb_001587_030 Hb_000342_050--Hb_000152_700 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_000152_700--Hb_004450_070 Hb_001097_040 Hb_001097_040 Hb_000152_700--Hb_001097_040 Hb_000152_700--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42582 20.0894 23.918 40.6259 14.7692 12.4715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8052 9.31282 11.1934 37.7275 34.9028

CAGE analysis