Hb_001226_160

Information

Type -
Description -
Location Contig1226: 236364-238289
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24130g
description POPTRDRAFT_819475; hypothetical protein
nr
ID XP_012077242.1
description PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
swissprot
ID Q6JB11
description Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays GN=MEG5 PE=2 SV=1
trembl
ID A0A067KGC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07639 PE=4 SV=1
Gene Ontology
ID GO:0000166
description u1 small nuclear ribonucleoprotein a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06872: 236587-238267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_160 0.0 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
2 Hb_000656_400 0.0623840931 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
3 Hb_000056_200 0.0631844814 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
4 Hb_002660_080 0.0650085078 - - 60S ribosomal protein L12A [Hevea brasiliensis]
5 Hb_096563_010 0.0653851322 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
6 Hb_002226_070 0.0664049864 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
7 Hb_003615_010 0.0666092963 - - 60S ribosomal protein L8, putative [Ricinus communis]
8 Hb_000251_130 0.0671682974 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
9 Hb_005357_030 0.0675504371 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
10 Hb_020956_020 0.0677466801 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
11 Hb_006332_020 0.0681234766 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
12 Hb_000510_130 0.0681625207 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
13 Hb_003929_250 0.0690851012 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
14 Hb_000398_180 0.0697723549 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
15 Hb_005305_080 0.0701017284 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
16 Hb_001242_060 0.0708896186 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
17 Hb_000465_460 0.0709320853 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
18 Hb_000243_030 0.0713356185 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
19 Hb_000920_180 0.0715712421 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
20 Hb_172632_090 0.0725011636 - - ribosomal pseudouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001226_160 Hb_001226_160 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_001358_030 Hb_001358_030 Hb_002660_080--Hb_001358_030 Hb_002660_080--Hb_096563_010 Hb_002660_080--Hb_000056_200 Hb_002660_080--Hb_002226_070 Hb_001489_060 Hb_001489_060 Hb_002660_080--Hb_001489_060 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_000613_140 Hb_000613_140 Hb_003615_010--Hb_000613_140 Hb_003615_010--Hb_000926_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5617 16.968 10.5772 12.4878 23.9624 31.7042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.736 41.6302 26.5867 16.2738 9.54464

CAGE analysis