Hb_001226_190

Information

Type -
Description -
Location Contig1226: 312154-320602
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID S8D925
description Uncharacterized protein OS=Genlisea aurea GN=M569_15597 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_190 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_003935_010 0.177068123 - - -
3 Hb_002217_290 0.2044701199 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
4 Hb_000922_210 0.2071211948 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
5 Hb_002000_120 0.2701056133 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_001210_100 0.2764697349 - - Gibberellin 20 oxidase, putative [Ricinus communis]
7 Hb_006922_070 0.2838579421 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
8 Hb_000668_130 0.3037886758 - - -
9 Hb_000039_200 0.307456396 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
10 Hb_001439_020 0.3129854687 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
11 Hb_000749_100 0.3149162427 - - -
12 Hb_001596_010 0.3384639765 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
13 Hb_006916_180 0.3458369749 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
14 Hb_003124_020 0.3461928482 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
15 Hb_003540_100 0.3474645765 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_000340_050 0.3510141138 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
17 Hb_024714_040 0.3519812452 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
18 Hb_136092_010 0.3602904264 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
19 Hb_001534_040 0.360619939 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
20 Hb_001623_120 0.3617919612 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001226_190 Hb_001226_190 Hb_003935_010 Hb_003935_010 Hb_001226_190--Hb_003935_010 Hb_002217_290 Hb_002217_290 Hb_001226_190--Hb_002217_290 Hb_000922_210 Hb_000922_210 Hb_001226_190--Hb_000922_210 Hb_002000_120 Hb_002000_120 Hb_001226_190--Hb_002000_120 Hb_001210_100 Hb_001210_100 Hb_001226_190--Hb_001210_100 Hb_006922_070 Hb_006922_070 Hb_001226_190--Hb_006922_070 Hb_003935_010--Hb_001210_100 Hb_136092_010 Hb_136092_010 Hb_003935_010--Hb_136092_010 Hb_001596_010 Hb_001596_010 Hb_003935_010--Hb_001596_010 Hb_000340_050 Hb_000340_050 Hb_003935_010--Hb_000340_050 Hb_006810_010 Hb_006810_010 Hb_003935_010--Hb_006810_010 Hb_002217_290--Hb_000922_210 Hb_130507_020 Hb_130507_020 Hb_002217_290--Hb_130507_020 Hb_000668_210 Hb_000668_210 Hb_002217_290--Hb_000668_210 Hb_001951_160 Hb_001951_160 Hb_002217_290--Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_002217_290--Hb_024404_040 Hb_000922_210--Hb_130507_020 Hb_000922_210--Hb_000668_210 Hb_000922_210--Hb_001951_160 Hb_000922_210--Hb_024404_040 Hb_006916_180 Hb_006916_180 Hb_002000_120--Hb_006916_180 Hb_000094_050 Hb_000094_050 Hb_002000_120--Hb_000094_050 Hb_003645_050 Hb_003645_050 Hb_002000_120--Hb_003645_050 Hb_010691_010 Hb_010691_010 Hb_002000_120--Hb_010691_010 Hb_002000_120--Hb_001210_100 Hb_002000_120--Hb_002217_290 Hb_001210_100--Hb_006916_180 Hb_001534_040 Hb_001534_040 Hb_001210_100--Hb_001534_040 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_005436_030 Hb_005436_030 Hb_001210_100--Hb_005436_030 Hb_001439_020 Hb_001439_020 Hb_006922_070--Hb_001439_020 Hb_009316_050 Hb_009316_050 Hb_006922_070--Hb_009316_050 Hb_003540_100 Hb_003540_100 Hb_006922_070--Hb_003540_100 Hb_024570_030 Hb_024570_030 Hb_006922_070--Hb_024570_030 Hb_005154_080 Hb_005154_080 Hb_006922_070--Hb_005154_080 Hb_002170_080 Hb_002170_080 Hb_006922_070--Hb_002170_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0529433 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0817479 0 0.0657819 0.0834952

CAGE analysis