Hb_001227_010

Information

Type transcription factor
Description TF Family: TCP
Location Contig1227: 23225-24520
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03140g
description POPTRDRAFT_1100821; hypothetical protein
nr
ID XP_002322035.2
description hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
swissprot
ID A1YKT1
description Transcription factor TCP18 OS=Arabidopsis thaliana GN=TCP18 PE=2 SV=1
trembl
ID B9IDZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03140g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06886: 22870-23443 , PASA_asmbl_06887: 23525-23775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_010 0.0 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
2 Hb_002639_120 0.0955275998 - - unnamed protein product [Vitis vinifera]
3 Hb_021443_020 0.1016221877 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
4 Hb_151616_010 0.1030649732 - - -
5 Hb_006890_050 0.1092100972 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
6 Hb_132517_010 0.112139029 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
7 Hb_001610_050 0.1169791865 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
8 Hb_000286_210 0.1178033523 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
9 Hb_001059_050 0.1210194869 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
10 Hb_006816_540 0.1244739051 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
11 Hb_003012_010 0.1341836725 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007075_020 0.1353076815 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
13 Hb_035006_010 0.1354333305 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
14 Hb_000702_040 0.135727047 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_002422_010 0.1381426417 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
16 Hb_005389_090 0.1394755548 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
17 Hb_005687_060 0.1450287691 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
18 Hb_002025_120 0.1499182325 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
19 Hb_161954_010 0.1515432982 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
20 Hb_008725_190 0.1534924684 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001227_010 Hb_001227_010 Hb_002639_120 Hb_002639_120 Hb_001227_010--Hb_002639_120 Hb_021443_020 Hb_021443_020 Hb_001227_010--Hb_021443_020 Hb_151616_010 Hb_151616_010 Hb_001227_010--Hb_151616_010 Hb_006890_050 Hb_006890_050 Hb_001227_010--Hb_006890_050 Hb_132517_010 Hb_132517_010 Hb_001227_010--Hb_132517_010 Hb_001610_050 Hb_001610_050 Hb_001227_010--Hb_001610_050 Hb_002639_120--Hb_006890_050 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_000702_040 Hb_000702_040 Hb_002639_120--Hb_000702_040 Hb_007313_050 Hb_007313_050 Hb_021443_020--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_021443_020--Hb_035006_010 Hb_001059_050 Hb_001059_050 Hb_021443_020--Hb_001059_050 Hb_021443_020--Hb_000286_210 Hb_021443_020--Hb_001610_050 Hb_151616_010--Hb_000286_210 Hb_151616_010--Hb_001059_050 Hb_002422_010 Hb_002422_010 Hb_151616_010--Hb_002422_010 Hb_151616_010--Hb_132517_010 Hb_003012_010 Hb_003012_010 Hb_151616_010--Hb_003012_010 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_006890_050--Hb_000702_040 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_005396_110 Hb_005396_110 Hb_132517_010--Hb_005396_110 Hb_132517_010--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_132517_010--Hb_001897_030 Hb_001610_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_001610_050--Hb_005892_010 Hb_001610_050--Hb_002639_120 Hb_001610_050--Hb_006890_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0906927 7.4038 0.444824 7.5737 0.0339893 0.0382212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0605808 0.783703 0.0673907

CAGE analysis