Hb_001227_030

Information

Type -
Description -
Location Contig1227: 69011-99183
Sequence    

Annotation

kegg
ID cit:102613880
description transcription initiation factor TFIID subunit 2-like
nr
ID XP_012092956.1
description PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8LPF0
description Transcription initiation factor TFIID subunit 2 OS=Arabidopsis thaliana GN=TAF2 PE=2 SV=1
trembl
ID V4TLA7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018514mg PE=4 SV=1
Gene Ontology
ID GO:0009506
description transcription initiation factor tfiid subunit 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06891: 68501-69014 , PASA_asmbl_06892: 69067-71316 , PASA_asmbl_06894: 75277-98474 , PASA_asmbl_06895: 75281-86521 , PASA_asmbl_06896: 97302-97449 , PASA_asmbl_06897: 78477-78618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_030 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
2 Hb_005489_020 0.0596348148 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000025_410 0.0614747969 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
4 Hb_002890_290 0.0631726434 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
5 Hb_005779_080 0.0653114907 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
6 Hb_152175_010 0.0683315658 - - Protein grpE, putative [Ricinus communis]
7 Hb_004837_180 0.0704812384 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
8 Hb_079526_030 0.071032448 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
9 Hb_000403_050 0.0714405007 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
10 Hb_003929_280 0.0718624277 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
11 Hb_000092_020 0.0723489471 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
12 Hb_027760_080 0.0723505866 - - cytochrome P450, putative [Ricinus communis]
13 Hb_009659_050 0.0726821264 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
14 Hb_007054_060 0.0729229191 - - -
15 Hb_000563_230 0.0738261575 - - phospholipase d zeta, putative [Ricinus communis]
16 Hb_023386_020 0.074412994 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
17 Hb_183612_040 0.0745921649 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
18 Hb_004236_050 0.0755237326 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
19 Hb_011537_050 0.0755424906 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
20 Hb_000160_210 0.0762159651 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001227_030 Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_001227_030--Hb_005489_020 Hb_000025_410 Hb_000025_410 Hb_001227_030--Hb_000025_410 Hb_002890_290 Hb_002890_290 Hb_001227_030--Hb_002890_290 Hb_005779_080 Hb_005779_080 Hb_001227_030--Hb_005779_080 Hb_152175_010 Hb_152175_010 Hb_001227_030--Hb_152175_010 Hb_004837_180 Hb_004837_180 Hb_001227_030--Hb_004837_180 Hb_005489_020--Hb_005779_080 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_008406_200 Hb_008406_200 Hb_000025_410--Hb_008406_200 Hb_000025_410--Hb_002890_290 Hb_005653_090 Hb_005653_090 Hb_000025_410--Hb_005653_090 Hb_000696_230 Hb_000696_230 Hb_000025_410--Hb_000696_230 Hb_000403_050 Hb_000403_050 Hb_000025_410--Hb_000403_050 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_002890_290--Hb_152175_010 Hb_003464_090 Hb_003464_090 Hb_002890_290--Hb_003464_090 Hb_000029_050 Hb_000029_050 Hb_005779_080--Hb_000029_050 Hb_000291_050 Hb_000291_050 Hb_005779_080--Hb_000291_050 Hb_001123_260 Hb_001123_260 Hb_005779_080--Hb_001123_260 Hb_005993_050 Hb_005993_050 Hb_005779_080--Hb_005993_050 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_003001_080 Hb_003001_080 Hb_152175_010--Hb_003001_080 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4429 14.1408 11.6062 6.93299 11.7674 12.8443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3796 12.6134 7.53197 9.5279 10.9117

CAGE analysis