Hb_001227_050

Information

Type -
Description -
Location Contig1227: 89889-90725
Sequence    

Annotation

kegg
ID fve:101296508
description putative ribonuclease H protein At1g65750-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_050 0.0 - - -
2 Hb_020367_060 0.0 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
3 Hb_062634_010 0.0045447055 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
4 Hb_029344_010 0.0053834534 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_085603_010 0.0061700563 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
6 Hb_146757_010 0.0090735702 - - -
7 Hb_186580_020 0.009831949 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
8 Hb_000295_070 0.0116670072 - - polyprotein [Oryza australiensis]
9 Hb_027970_010 0.0124093283 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_002189_020 0.0135978787 - - conserved hypothetical protein [Ricinus communis]
11 Hb_060997_010 0.0135978787 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
12 Hb_000698_050 0.0146104043 - - -
13 Hb_119858_010 0.0157151098 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_001821_040 0.0157977015 - - -
15 Hb_002121_060 0.017072861 - - -
16 Hb_005511_110 0.0184288553 - - -
17 Hb_000832_260 0.0187144158 - - Protein gar2, putative [Ricinus communis]
18 Hb_109050_010 0.0187144158 - - -
19 Hb_011980_030 0.0204434567 - - conserved hypothetical protein [Ricinus communis]
20 Hb_060300_010 0.0228852667 - - hypothetical protein F383_16817 [Gossypium arboreum]

Gene co-expression network

sample Hb_001227_050 Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_001227_050--Hb_020367_060 Hb_062634_010 Hb_062634_010 Hb_001227_050--Hb_062634_010 Hb_029344_010 Hb_029344_010 Hb_001227_050--Hb_029344_010 Hb_085603_010 Hb_085603_010 Hb_001227_050--Hb_085603_010 Hb_146757_010 Hb_146757_010 Hb_001227_050--Hb_146757_010 Hb_186580_020 Hb_186580_020 Hb_001227_050--Hb_186580_020 Hb_001227_050--Hb_020367_060 Hb_001227_050--Hb_062634_010 Hb_001227_050--Hb_029344_010 Hb_001227_050--Hb_085603_010 Hb_001227_050--Hb_146757_010 Hb_001227_050--Hb_186580_020 Hb_062634_010--Hb_085603_010 Hb_062634_010--Hb_020367_060 Hb_062634_010--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_062634_010--Hb_027970_010 Hb_002189_020 Hb_002189_020 Hb_062634_010--Hb_002189_020 Hb_029344_010--Hb_146757_010 Hb_029344_010--Hb_020367_060 Hb_000295_070 Hb_000295_070 Hb_029344_010--Hb_000295_070 Hb_029344_010--Hb_062634_010 Hb_119858_010 Hb_119858_010 Hb_029344_010--Hb_119858_010 Hb_085603_010--Hb_186580_020 Hb_085603_010--Hb_020367_060 Hb_085603_010--Hb_027970_010 Hb_085603_010--Hb_002189_020 Hb_146757_010--Hb_000295_070 Hb_146757_010--Hb_119858_010 Hb_002121_060 Hb_002121_060 Hb_146757_010--Hb_002121_060 Hb_146757_010--Hb_020367_060 Hb_186580_020--Hb_027970_010 Hb_186580_020--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_186580_020--Hb_060997_010 Hb_000698_050 Hb_000698_050 Hb_186580_020--Hb_000698_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0833583 0.322292

CAGE analysis