Hb_001227_060

Information

Type -
Description -
Location Contig1227: 99933-102089
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20190g
description POPTRDRAFT_758105; pentatricopeptide repeat-containing family protein
nr
ID XP_012069204.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
swissprot
ID Q9SVH3
description Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
trembl
ID B9GWJ6
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0003s20190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06899: 100063-100820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
2 Hb_004156_050 0.0629861827 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
3 Hb_003168_110 0.0784686631 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
4 Hb_000050_190 0.0865492907 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001329_140 0.0877856443 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
6 Hb_001213_050 0.0885085948 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
7 Hb_004672_040 0.0894660989 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
8 Hb_000207_330 0.090171817 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
9 Hb_172632_080 0.0910441994 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
10 Hb_006915_030 0.0923891301 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
11 Hb_001198_100 0.094015945 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
12 Hb_000603_280 0.0943216341 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
13 Hb_000665_060 0.0945160356 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
14 Hb_001049_090 0.096512878 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
15 Hb_009548_020 0.0967334494 - - structural constituent of cell wall, putative [Ricinus communis]
16 Hb_012490_080 0.0968855607 - - threonine synthase, putative [Ricinus communis]
17 Hb_000340_230 0.1003140426 - - synapse-associated protein, putative [Ricinus communis]
18 Hb_000544_090 0.100626547 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
19 Hb_006634_070 0.1013531333 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
20 Hb_000072_220 0.1026662209 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001227_060 Hb_001227_060 Hb_004156_050 Hb_004156_050 Hb_001227_060--Hb_004156_050 Hb_003168_110 Hb_003168_110 Hb_001227_060--Hb_003168_110 Hb_000050_190 Hb_000050_190 Hb_001227_060--Hb_000050_190 Hb_001329_140 Hb_001329_140 Hb_001227_060--Hb_001329_140 Hb_001213_050 Hb_001213_050 Hb_001227_060--Hb_001213_050 Hb_004672_040 Hb_004672_040 Hb_001227_060--Hb_004672_040 Hb_000340_230 Hb_000340_230 Hb_004156_050--Hb_000340_230 Hb_000665_060 Hb_000665_060 Hb_004156_050--Hb_000665_060 Hb_172632_080 Hb_172632_080 Hb_004156_050--Hb_172632_080 Hb_001198_100 Hb_001198_100 Hb_004156_050--Hb_001198_100 Hb_004225_050 Hb_004225_050 Hb_004156_050--Hb_004225_050 Hb_003168_110--Hb_001329_140 Hb_000684_250 Hb_000684_250 Hb_003168_110--Hb_000684_250 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_000590_050 Hb_000590_050 Hb_003168_110--Hb_000590_050 Hb_000009_560 Hb_000009_560 Hb_003168_110--Hb_000009_560 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_000050_190--Hb_004672_040 Hb_000599_180 Hb_000599_180 Hb_000050_190--Hb_000599_180 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070 Hb_001329_140--Hb_000684_250 Hb_000803_260 Hb_000803_260 Hb_001329_140--Hb_000803_260 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_001329_140--Hb_000590_050 Hb_000563_640 Hb_000563_640 Hb_001213_050--Hb_000563_640 Hb_015807_070 Hb_015807_070 Hb_001213_050--Hb_015807_070 Hb_002234_170 Hb_002234_170 Hb_001213_050--Hb_002234_170 Hb_004545_140 Hb_004545_140 Hb_001213_050--Hb_004545_140 Hb_000009_600 Hb_000009_600 Hb_001213_050--Hb_000009_600 Hb_007416_180 Hb_007416_180 Hb_001213_050--Hb_007416_180 Hb_001163_100 Hb_001163_100 Hb_004672_040--Hb_001163_100 Hb_004672_040--Hb_003168_110 Hb_000207_330 Hb_000207_330 Hb_004672_040--Hb_000207_330 Hb_000192_080 Hb_000192_080 Hb_004672_040--Hb_000192_080 Hb_006915_030 Hb_006915_030 Hb_004672_040--Hb_006915_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6111 6.95404 3.5152 7.11868 4.78613 8.22638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6261 5.29268 9.71474 6.06584 7.99173

CAGE analysis