Hb_001227_090

Information

Type -
Description -
Location Contig1227: 140077-140766
Sequence    

Annotation

kegg
ID rcu:RCOM_0382010
description peroxiredoxin, putative (EC:1.11.1.15)
nr
ID XP_002528579.1
description peroxiredoxin, putative [Ricinus communis]
swissprot
ID Q949U7
description Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2
trembl
ID B9SRG0
description Peroxiredoxin, putative OS=Ricinus communis GN=RCOM_0382010 PE=4 SV=1
Gene Ontology
ID GO:0009505
description peroxiredoxin-2e- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_090 0.0 - - peroxiredoxin, putative [Ricinus communis]
2 Hb_001195_450 0.0854815103 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
3 Hb_012150_030 0.0998884423 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_000941_100 0.1076426402 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
5 Hb_003053_110 0.1088850009 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
6 Hb_001629_090 0.1090072062 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000529_180 0.1103337923 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
8 Hb_001587_180 0.1103634864 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
9 Hb_000340_150 0.1103955725 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
10 Hb_001723_060 0.1131462174 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
11 Hb_001195_770 0.1133336935 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_005511_140 0.1136171398 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_004375_050 0.1142494954 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001438_010 0.1148311059 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
15 Hb_009775_010 0.1159390771 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
16 Hb_029920_030 0.1170874027 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
17 Hb_000023_360 0.117550542 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
18 Hb_000282_080 0.1178947381 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000167_110 0.1179443694 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_001410_070 0.1186615769 - - hypothetical protein JCGZ_20421 [Jatropha curcas]

Gene co-expression network

sample Hb_001227_090 Hb_001227_090 Hb_001195_450 Hb_001195_450 Hb_001227_090--Hb_001195_450 Hb_012150_030 Hb_012150_030 Hb_001227_090--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_001227_090--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_001227_090--Hb_003053_110 Hb_001629_090 Hb_001629_090 Hb_001227_090--Hb_001629_090 Hb_000529_180 Hb_000529_180 Hb_001227_090--Hb_000529_180 Hb_001723_060 Hb_001723_060 Hb_001195_450--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001195_450--Hb_002762_110 Hb_005511_140 Hb_005511_140 Hb_001195_450--Hb_005511_140 Hb_009778_060 Hb_009778_060 Hb_001195_450--Hb_009778_060 Hb_001195_450--Hb_012150_030 Hb_000282_080 Hb_000282_080 Hb_001195_450--Hb_000282_080 Hb_012150_030--Hb_003053_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_012150_030--Hb_000941_100 Hb_000941_100--Hb_003053_110 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_003053_110--Hb_134849_010 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_000983_070 Hb_000983_070 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_001629_090--Hb_002762_110 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_000529_180--Hb_010863_050 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000046_540 Hb_000046_540 Hb_000529_180--Hb_000046_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.2573 63.4503 141.642 82.1118 35.8133 33.2606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.876 86.8245 73.5195 68.215 253.016

CAGE analysis