Hb_001227_110

Information

Type -
Description -
Location Contig1227: 156856-159708
Sequence    

Annotation

kegg
ID rcu:RCOM_0382140
description U2 snrnp auxiliary factor, small subunit, putative
nr
ID XP_002528581.1
description U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
swissprot
ID Q9FMY5
description Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=1
trembl
ID B9SRG2
description U2 snrnp auxiliary factor, small subunit, putative OS=Ricinus communis GN=RCOM_0382140 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af small subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06909: 156906-159940 , PASA_asmbl_06911: 158536-159940 , PASA_asmbl_06912: 159171-159631 , PASA_asmbl_06913: 157389-157955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_110 0.0 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
2 Hb_000025_750 0.0589129509 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
3 Hb_000016_280 0.0746871167 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
4 Hb_000093_130 0.0748427074 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_001408_090 0.0847523802 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
6 Hb_000640_210 0.0888492148 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
7 Hb_025048_040 0.090485101 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
8 Hb_101151_020 0.0953764483 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000116_570 0.0967062804 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
10 Hb_001348_140 0.0976090642 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001498_030 0.0976363038 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
12 Hb_005144_040 0.0986086362 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
13 Hb_012760_200 0.1001285155 - - protein phsophatase-2a, putative [Ricinus communis]
14 Hb_001009_050 0.1020738438 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
15 Hb_001396_290 0.1029715665 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
16 Hb_000692_170 0.1035259825 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
17 Hb_000322_170 0.103577822 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
18 Hb_023020_060 0.1037266267 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
19 Hb_002133_030 0.1041111323 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
20 Hb_004032_350 0.105407315 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001227_110 Hb_001227_110 Hb_000025_750 Hb_000025_750 Hb_001227_110--Hb_000025_750 Hb_000016_280 Hb_000016_280 Hb_001227_110--Hb_000016_280 Hb_000093_130 Hb_000093_130 Hb_001227_110--Hb_000093_130 Hb_001408_090 Hb_001408_090 Hb_001227_110--Hb_001408_090 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000116_570 Hb_000116_570 Hb_000016_280--Hb_000116_570 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_000685_080 Hb_000685_080 Hb_000016_280--Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000016_280--Hb_003125_060 Hb_010883_080 Hb_010883_080 Hb_000016_280--Hb_010883_080 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_007416_200 Hb_007416_200 Hb_000093_130--Hb_007416_200 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_003216_110 Hb_003216_110 Hb_001408_090--Hb_003216_110 Hb_001408_090--Hb_002025_140 Hb_000331_480 Hb_000331_480 Hb_001408_090--Hb_000331_480 Hb_001498_030 Hb_001498_030 Hb_001408_090--Hb_001498_030 Hb_000322_170 Hb_000322_170 Hb_000640_210--Hb_000322_170 Hb_000076_290 Hb_000076_290 Hb_000640_210--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000640_210--Hb_000174_200 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060 Hb_000212_280 Hb_000212_280 Hb_025048_040--Hb_000212_280 Hb_025048_040--Hb_000331_480 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_025048_040--Hb_012760_200 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
339.75 124.385 55.4805 27.5445 260.356 264.512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.847 55.6023 44.5887 56.7587 15.4123

CAGE analysis