Hb_001229_040

Information

Type -
Description -
Location Contig1229: 33764-37786
Sequence    

Annotation

kegg
ID rcu:RCOM_1691120
description Grave disease carrier protein, putative
nr
ID XP_012086759.1
description PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
swissprot
ID O04619
description Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana GN=ADNT1 PE=2 SV=1
trembl
ID A0A067JMX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20482 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial adenine nucleotide transporter adnt1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06943: 33707-34047 , PASA_asmbl_06944: 36491-37615
cDNA
(Sanger)
(ID:Location)		 007_F19.ab1: 33707-34044 , 023_J21.ab1: 33707-34044 , 027_C15.ab1: 33707-34044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001229_040 0.0 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
2 Hb_011883_010 0.1073439812 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
3 Hb_000789_060 0.1171211398 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
4 Hb_001021_170 0.1184645343 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
5 Hb_003747_100 0.1209402063 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_000227_120 0.1221577706 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000958_110 0.1248104981 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
8 Hb_000768_040 0.1255267337 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
9 Hb_002890_290 0.1264428117 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
10 Hb_017224_030 0.1277047285 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
11 Hb_005779_080 0.1297642504 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
12 Hb_005489_020 0.1309703785 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004355_020 0.1310918313 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
14 Hb_004619_020 0.1312463781 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003106_060 0.1315673116 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
16 Hb_002234_180 0.1319044052 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001546_080 0.1322311822 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
18 Hb_002184_110 0.1324825442 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
19 Hb_000571_120 0.1328951566 - - importin beta-1, putative [Ricinus communis]
20 Hb_000291_050 0.1347830174 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001229_040 Hb_001229_040 Hb_011883_010 Hb_011883_010 Hb_001229_040--Hb_011883_010 Hb_000789_060 Hb_000789_060 Hb_001229_040--Hb_000789_060 Hb_001021_170 Hb_001021_170 Hb_001229_040--Hb_001021_170 Hb_003747_100 Hb_003747_100 Hb_001229_040--Hb_003747_100 Hb_000227_120 Hb_000227_120 Hb_001229_040--Hb_000227_120 Hb_000958_110 Hb_000958_110 Hb_001229_040--Hb_000958_110 Hb_017224_030 Hb_017224_030 Hb_011883_010--Hb_017224_030 Hb_005291_030 Hb_005291_030 Hb_011883_010--Hb_005291_030 Hb_000571_120 Hb_000571_120 Hb_011883_010--Hb_000571_120 Hb_003057_100 Hb_003057_100 Hb_011883_010--Hb_003057_100 Hb_011671_430 Hb_011671_430 Hb_011883_010--Hb_011671_430 Hb_000953_020 Hb_000953_020 Hb_011883_010--Hb_000953_020 Hb_000302_270 Hb_000302_270 Hb_000789_060--Hb_000302_270 Hb_005539_220 Hb_005539_220 Hb_000789_060--Hb_005539_220 Hb_008246_040 Hb_008246_040 Hb_000789_060--Hb_008246_040 Hb_000403_050 Hb_000403_050 Hb_000789_060--Hb_000403_050 Hb_002671_140 Hb_002671_140 Hb_000789_060--Hb_002671_140 Hb_000521_320 Hb_000521_320 Hb_000789_060--Hb_000521_320 Hb_015807_070 Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_004355_020 Hb_004355_020 Hb_001021_170--Hb_004355_020 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_045793_010 Hb_045793_010 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_000808_030 Hb_000808_030 Hb_003747_100--Hb_000808_030 Hb_000331_680 Hb_000331_680 Hb_003747_100--Hb_000331_680 Hb_000120_130 Hb_000120_130 Hb_003747_100--Hb_000120_130 Hb_000077_140 Hb_000077_140 Hb_003747_100--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_003747_100--Hb_003504_030 Hb_000964_130 Hb_000964_130 Hb_003747_100--Hb_000964_130 Hb_003142_020 Hb_003142_020 Hb_000227_120--Hb_003142_020 Hb_003106_060 Hb_003106_060 Hb_000227_120--Hb_003106_060 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_003291_010 Hb_003291_010 Hb_000227_120--Hb_003291_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_003050_220 Hb_003050_220 Hb_000958_110--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_000958_110--Hb_000015_040 Hb_000002_340 Hb_000002_340 Hb_000958_110--Hb_000002_340 Hb_002232_410 Hb_002232_410 Hb_000958_110--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000958_110--Hb_003151_040 Hb_000958_110--Hb_017224_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.9622 61.044 28.2395 15.1268 20.646 55.6262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.9612 43.7347 40.4335 29.5777 43.2197

CAGE analysis