Hb_001230_010

Information

Type -
Description -
Location Contig1230: 24279-26263
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001230_010 0.0 - - -
2 Hb_002007_290 0.0973188732 - - -
3 Hb_166786_030 0.1828041226 - - PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]
4 Hb_002094_020 0.187166664 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
5 Hb_000928_230 0.1945489794 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031862_050 0.2061595935 - - Cell division cycle protein, putative [Ricinus communis]
7 Hb_017111_010 0.2156004178 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
8 Hb_029162_020 0.2212960203 - - -
9 Hb_027751_030 0.2214952176 - - -
10 Hb_048610_010 0.2218725507 - - -
11 Hb_001980_020 0.2226492307 - - -
12 Hb_001178_020 0.2259416435 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
13 Hb_004060_010 0.2311526389 - - -
14 Hb_002078_430 0.2329422787 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
15 Hb_126669_010 0.2330973863 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
16 Hb_000270_400 0.2382315681 - - lipase, putative [Ricinus communis]
17 Hb_002307_050 0.239855807 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
18 Hb_175445_010 0.2447761014 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
19 Hb_004254_040 0.2469341618 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
20 Hb_001565_100 0.2479781912 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001230_010 Hb_001230_010 Hb_002007_290 Hb_002007_290 Hb_001230_010--Hb_002007_290 Hb_166786_030 Hb_166786_030 Hb_001230_010--Hb_166786_030 Hb_002094_020 Hb_002094_020 Hb_001230_010--Hb_002094_020 Hb_000928_230 Hb_000928_230 Hb_001230_010--Hb_000928_230 Hb_031862_050 Hb_031862_050 Hb_001230_010--Hb_031862_050 Hb_017111_010 Hb_017111_010 Hb_001230_010--Hb_017111_010 Hb_002007_290--Hb_166786_030 Hb_002007_290--Hb_002094_020 Hb_002007_290--Hb_000928_230 Hb_002007_290--Hb_017111_010 Hb_002007_290--Hb_031862_050 Hb_001178_020 Hb_001178_020 Hb_166786_030--Hb_001178_020 Hb_004254_040 Hb_004254_040 Hb_166786_030--Hb_004254_040 Hb_024828_040 Hb_024828_040 Hb_166786_030--Hb_024828_040 Hb_001635_220 Hb_001635_220 Hb_166786_030--Hb_001635_220 Hb_002094_020--Hb_017111_010 Hb_027751_030 Hb_027751_030 Hb_002094_020--Hb_027751_030 Hb_000959_360 Hb_000959_360 Hb_002094_020--Hb_000959_360 Hb_002094_020--Hb_000928_230 Hb_126669_010 Hb_126669_010 Hb_002094_020--Hb_126669_010 Hb_000928_230--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000928_230--Hb_000270_400 Hb_000523_020 Hb_000523_020 Hb_000928_230--Hb_000523_020 Hb_002627_060 Hb_002627_060 Hb_000928_230--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_000928_230--Hb_000172_610 Hb_170116_010 Hb_170116_010 Hb_000928_230--Hb_170116_010 Hb_168418_010 Hb_168418_010 Hb_031862_050--Hb_168418_010 Hb_000046_020 Hb_000046_020 Hb_031862_050--Hb_000046_020 Hb_029162_020 Hb_029162_020 Hb_031862_050--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_031862_050--Hb_048610_010 Hb_000186_100 Hb_000186_100 Hb_017111_010--Hb_000186_100 Hb_017111_010--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_017111_010--Hb_002388_060 Hb_003687_200 Hb_003687_200 Hb_017111_010--Hb_003687_200 Hb_007545_210 Hb_007545_210 Hb_017111_010--Hb_007545_210 Hb_017111_010--Hb_126669_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.467 0.404411 0 0.173259 2.59243 9.66879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2222 4.4141 0.135768 0.253818 0

CAGE analysis