Hb_001230_030

Information

Type -
Description -
Location Contig1230: 35233-36230
Sequence    

Annotation

kegg
ID pop:POPTR_0011s065502
description hypothetical protein
nr
ID XP_011009667.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
swissprot
ID O64781
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 OS=Arabidopsis thaliana GN=At1g61390 PE=2 SV=1
trembl
ID U5FYT7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s065502g PE=3 SV=1
Gene Ontology
ID GO:0000166
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at3g14840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001230_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
2 Hb_012812_010 0.1141105962 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
3 Hb_000340_290 0.1557454937 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
4 Hb_002400_160 0.1596217446 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
5 Hb_000684_050 0.1597478726 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]
6 Hb_001488_040 0.162020604 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
7 Hb_000331_510 0.1629945164 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
8 Hb_024714_070 0.1650352948 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
9 Hb_001080_140 0.1693845891 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
10 Hb_017914_010 0.171761804 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
11 Hb_019863_060 0.1744074028 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
12 Hb_007850_010 0.1754943296 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
13 Hb_001195_730 0.1772413924 - - PREDICTED: protein LYK5-like [Jatropha curcas]
14 Hb_004117_270 0.1776059163 - - -
15 Hb_014006_010 0.1807313963 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_001404_090 0.1808729597 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
17 Hb_000920_130 0.181149514 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003185_100 0.1817165254 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
19 Hb_008667_060 0.1824369059 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
20 Hb_000473_150 0.1828502867 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001230_030 Hb_001230_030 Hb_012812_010 Hb_012812_010 Hb_001230_030--Hb_012812_010 Hb_000340_290 Hb_000340_290 Hb_001230_030--Hb_000340_290 Hb_002400_160 Hb_002400_160 Hb_001230_030--Hb_002400_160 Hb_000684_050 Hb_000684_050 Hb_001230_030--Hb_000684_050 Hb_001488_040 Hb_001488_040 Hb_001230_030--Hb_001488_040 Hb_000331_510 Hb_000331_510 Hb_001230_030--Hb_000331_510 Hb_001230_020 Hb_001230_020 Hb_012812_010--Hb_001230_020 Hb_012812_010--Hb_002400_160 Hb_019863_060 Hb_019863_060 Hb_012812_010--Hb_019863_060 Hb_002154_020 Hb_002154_020 Hb_012812_010--Hb_002154_020 Hb_000120_160 Hb_000120_160 Hb_012812_010--Hb_000120_160 Hb_007012_040 Hb_007012_040 Hb_000340_290--Hb_007012_040 Hb_014006_010 Hb_014006_010 Hb_000340_290--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000340_290--Hb_003124_270 Hb_000805_190 Hb_000805_190 Hb_000340_290--Hb_000805_190 Hb_001956_060 Hb_001956_060 Hb_000340_290--Hb_001956_060 Hb_000154_130 Hb_000154_130 Hb_000340_290--Hb_000154_130 Hb_002249_050 Hb_002249_050 Hb_002400_160--Hb_002249_050 Hb_002400_160--Hb_002154_020 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_000126_070 Hb_000126_070 Hb_002400_160--Hb_000126_070 Hb_001404_090 Hb_001404_090 Hb_000684_050--Hb_001404_090 Hb_001124_140 Hb_001124_140 Hb_000684_050--Hb_001124_140 Hb_005305_120 Hb_005305_120 Hb_000684_050--Hb_005305_120 Hb_006816_480 Hb_006816_480 Hb_000684_050--Hb_006816_480 Hb_000416_060 Hb_000416_060 Hb_000684_050--Hb_000416_060 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_009486_160 Hb_009486_160 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_011249_060 Hb_011249_060 Hb_001488_040--Hb_011249_060 Hb_005765_040 Hb_005765_040 Hb_001488_040--Hb_005765_040 Hb_000331_510--Hb_006816_480 Hb_001571_060 Hb_001571_060 Hb_000331_510--Hb_001571_060 Hb_000205_250 Hb_000205_250 Hb_000331_510--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_000331_510--Hb_000345_320 Hb_000666_010 Hb_000666_010 Hb_000331_510--Hb_000666_010 Hb_000227_330 Hb_000227_330 Hb_000331_510--Hb_000227_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269386 3.60488 1.3259 0.703307 0.227428 0.187886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06257 0.556399 0.453572 1.70964 1.99558

CAGE analysis